PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1tsja-  (   1 )       mdipittflfnnqAeeaVklytslfedSeiitakyg-------dpgt
d1u6la1  (   4 )         qivpyLiFngnCreAFscYhqhlg-gtlea-lpfgdspepak-dk
d1u7ia1  (   2 )       sarvrpflFqgvqAeaA-nfYlsLfddAeilqiqryga-egpGpegS
d2q48a-  (  20 )    hlvftefkqLlVeaqkVgdAvtfYksAFg-Aies---------------h
                               b    aaaaaaaaaaa    bbbb               

                             60        70        80        90        100 
d1tsja-  (  49 )    vqhsiFtlngqvfAip--------------------iSlfvtvd----ie
d1u6la1  (  53 )    I-harLvvgsfAlAsDnhpa----ypyegik----gcsislnv-ska-Ae
d1u7ia1  (  49 )    VlkaLfrlgdqsVhCiDshv----rhafdftp---afsffvdCesnaqIe
d2q48a-  (  70 )    vlsseLnlagssFvVcD-Vsslpgfs--tAksegsgvtfllgtk---dAe
                      bbbbbb  bbbbbb                      bbbb       a

                             110       120       130       140  
d1tsja-  (  92 )    rlfnglkd--gailpktn-----ppyefAwVqdkfgvSfqlAlp
d1u6la1  (  96 )    rlfnaLae-ggsvqplgptf---wAasf-gFtDrFgVaWVnCed
d1u7ia1  (  92 )    rLaeaLsd-ggkalplgdyg---fsqrfAwLaDrfgVSWqLnla
d2q48a-  ( 114 )    aavakAvdagAvkvevt--eaevelgfkgkVtDpfgVtWiFae 
                    aaaaaaa    bb             bbbbbb     bbbbb

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1tsja- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1tsja- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein MW1090	3-demethylubiquinone-9 3-methyltransferase	Staphylococcus aureus [TaxId: 1280]	view
d1u6la1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1u6la1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein PA1353	3-demethylubiquinone-9 3-methyltransferase	Pseudomonas aeruginosa [TaxId: 287]	view
d1u7ia1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1u7ia1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein PA1358	3-demethylubiquinone-9 3-methyltransferase	Pseudomonas aeruginosa [TaxId: 287]	view
d2q48a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2q48a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Hypothetical protein At5g48480	Thale cress (Arabidopsis thaliana) [TaxId: 3702]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	-	-	-	-	Q	I	V	P	Y	L	I	F	N	G	N	C	R	E	A	F	S	C	Y	H	Q	H	L	G	-	G	T	L	E	A	-	L	P	F	G	D	S	P	E	P	A	K	-	D	K	I	-	H	A	R	L	V	V	G	S	F	A	L	A	S	D	N	H	P	A	-	-	-	-	Y	P	Y	E	G	I	K	-	-	-	-	G	C	S	I	S	L	N	V	-	S	K	A	-	A	E	R	L	F	N	A	L	A	E	-	G	G	S	V	Q	P	L	G	P	T	F	-	-	-	W	A	A	S	F	-	G	F	T	D	R	F	G	V	A	W	V	N	C	E	D
-	-	-	S	A	R	V	R	P	F	L	F	Q	G	V	Q	A	E	A	A	-	N	F	Y	L	S	L	F	D	D	A	E	I	L	Q	I	Q	R	Y	G	A	-	E	G	P	G	P	E	G	S	V	L	K	A	L	F	R	L	G	D	Q	S	V	H	C	I	D	S	H	V	-	-	-	-	R	H	A	F	D	F	T	P	-	-	-	A	F	S	F	F	V	D	C	E	S	N	A	Q	I	E	R	L	A	E	A	L	S	D	-	G	G	K	A	L	P	L	G	D	Y	G	-	-	-	F	S	Q	R	F	A	W	L	A	D	R	F	G	V	S	W	Q	L	N	L	A
H	L	V	F	T	E	F	K	Q	L	L	V	E	A	Q	K	V	G	D	A	V	T	F	Y	K	S	A	F	G	-	A	I	E	S	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	H	V	L	S	S	E	L	N	L	A	G	S	S	F	V	V	C	D	-	V	S	S	L	P	G	F	S	-	-	T	A	K	S	E	G	S	G	V	T	F	L	L	G	T	K	-	-	-	D	A	E	A	A	V	A	K	A	V	D	A	G	A	V	K	V	E	V	T	-	-	E	A	E	V	E	L	G	F	K	G	K	V	T	D	P	F	G	V	T	W	I	F	A	E	-

Member	Chain	UniProtKB	GO term

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-	-	-	M	D	I	P	I	T	T	F	L	F	N	N	Q	A	E	E	A	V	K	L	Y	T	S	L	F	E	D	S	E	I	I	T	A	K	Y	G	-	-	-	-	-	-	-	D	P	G	T	V	Q	H	S	I	F	T	L	N	G	Q	V	F	A	I	P	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	I	S	L	F	V	T	V	D	-	-	-	-	I	E	R	L	F	N	G	L	K	D	-	-	G	A	I	L	P	K	T	N	-	-	-	-	-	P	P	Y	E	F	A	W	V	Q	D	K	F	G	V	S	F	Q	L	A	L	P
-	-	-	-	-	Q	I	V	P	Y	L	I	F	N	G	N	C	R	E	A	F	S	C	Y	H	Q	H	L	G	-	G	T	L	E	A	-	L	P	F	G	D	S	P	E	P	A	K	-	D	K	I	-	H	A	R	L	V	V	G	S	F	A	L	A	S	D	N	H	P	A	-	-	-	-	Y	P	Y	E	G	I	K	-	-	-	-	G	C	S	I	S	L	N	V	-	S	K	A	-	A	E	R	L	F	N	A	L	A	E	-	G	G	S	V	Q	P	L	G	P	T	F	-	-	-	W	A	A	S	F	-	G	F	T	D	R	F	G	V	A	W	V	N	C	E	D
-	-	-	S	A	R	V	R	P	F	L	F	Q	G	V	Q	A	E	A	A	-	N	F	Y	L	S	L	F	D	D	A	E	I	L	Q	I	Q	R	Y	G	A	-	E	G	P	G	P	E	G	S	V	L	K	A	L	F	R	L	G	D	Q	S	V	H	C	I	D	S	H	V	-	-	-	-	R	H	A	F	D	F	T	P	-	-	-	A	F	S	F	F	V	D	C	E	S	N	A	Q	I	E	R	L	A	E	A	L	S	D	-	G	G	K	A	L	P	L	G	D	Y	G	-	-	-	F	S	Q	R	F	A	W	L	A	D	R	F	G	V	S	W	Q	L	N	L	A
H	L	V	F	T	E	F	K	Q	L	L	V	E	A	Q	K	V	G	D	A	V	T	F	Y	K	S	A	F	G	-	A	I	E	S	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	H	V	L	S	S	E	L	N	L	A	G	S	S	F	V	V	C	D	-	V	S	S	L	P	G	F	S	-	-	T	A	K	S	E	G	S	G	V	T	F	L	L	G	T	K	-	-	-	D	A	E	A	A	V	A	K	A	V	D	A	G	A	V	K	V	E	V	T	-	-	E	A	E	V	E	L	G	F	K	G	K	V	T	D	P	F	G	V	T	W	I	F	A	E	-

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-	-	-	-	-	Q	I	V	P	Y	L	I	F	N	G	N	C	R	E	A	F	S	C	Y	H	Q	H	L	G	-	G	T	L	E	A	-	L	P	F	G	D	S	P	E	P	A	K	-	D	K	I	-	H	A	R	L	V	V	G	S	F	A	L	A	S	D	N	H	P	A	-	-	-	-	Y	P	Y	E	G	I	K	-	-	-	-	G	C	S	I	S	L	N	V	-	S	K	A	-	A	E	R	L	F	N	A	L	A	E	-	G	G	S	V	Q	P	L	G	P	T	F	-	-	-	W	A	A	S	F	-	G	F	T	D	R	F	G	V	A	W	V	N	C	E	D
-	-	-	S	A	R	V	R	P	F	L	F	Q	G	V	Q	A	E	A	A	-	N	F	Y	L	S	L	F	D	D	A	E	I	L	Q	I	Q	R	Y	G	A	-	E	G	P	G	P	E	G	S	V	L	K	A	L	F	R	L	G	D	Q	S	V	H	C	I	D	S	H	V	-	-	-	-	R	H	A	F	D	F	T	P	-	-	-	A	F	S	F	F	V	D	C	E	S	N	A	Q	I	E	R	L	A	E	A	L	S	D	-	G	G	K	A	L	P	L	G	D	Y	G	-	-	-	F	S	Q	R	F	A	W	L	A	D	R	F	G	V	S	W	Q	L	N	L	A
H	L	V	F	T	E	F	K	Q	L	L	V	E	A	Q	K	V	G	D	A	V	T	F	Y	K	S	A	F	G	-	A	I	E	S	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	H	V	L	S	S	E	L	N	L	A	G	S	S	F	V	V	C	D	-	V	S	S	L	P	G	F	S	-	-	T	A	K	S	E	G	S	G	V	T	F	L	L	G	T	K	-	-	-	D	A	E	A	A	V	A	K	A	V	D	A	G	A	V	K	V	E	V	T	-	-	E	A	E	V	E	L	G	F	K	G	K	V	T	D	P	F	G	V	T	W	I	F	A	E	-

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-	-	-	M	D	I	P	I	T	T	F	L	F	N	N	Q	A	E	E	A	V	K	L	Y	T	S	L	F	E	D	S	E	I	I	T	A	K	Y	G	-	-	-	-	-	-	-	D	P	G	T	V	Q	H	S	I	F	T	L	N	G	Q	V	F	A	I	P	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	I	S	L	F	V	T	V	D	-	-	-	-	I	E	R	L	F	N	G	L	K	D	-	-	G	A	I	L	P	K	T	N	-	-	-	-	-	P	P	Y	E	F	A	W	V	Q	D	K	F	G	V	S	F	Q	L	A	L	P
-	-	-	-	-	Q	I	V	P	Y	L	I	F	N	G	N	C	R	E	A	F	S	C	Y	H	Q	H	L	G	-	G	T	L	E	A	-	L	P	F	G	D	S	P	E	P	A	K	-	D	K	I	-	H	A	R	L	V	V	G	S	F	A	L	A	S	D	N	H	P	A	-	-	-	-	Y	P	Y	E	G	I	K	-	-	-	-	G	C	S	I	S	L	N	V	-	S	K	A	-	A	E	R	L	F	N	A	L	A	E	-	G	G	S	V	Q	P	L	G	P	T	F	-	-	-	W	A	A	S	F	-	G	F	T	D	R	F	G	V	A	W	V	N	C	E	D
-	-	-	S	A	R	V	R	P	F	L	F	Q	G	V	Q	A	E	A	A	-	N	F	Y	L	S	L	F	D	D	A	E	I	L	Q	I	Q	R	Y	G	A	-	E	G	P	G	P	E	G	S	V	L	K	A	L	F	R	L	G	D	Q	S	V	H	C	I	D	S	H	V	-	-	-	-	R	H	A	F	D	F	T	P	-	-	-	A	F	S	F	F	V	D	C	E	S	N	A	Q	I	E	R	L	A	E	A	L	S	D	-	G	G	K	A	L	P	L	G	D	Y	G	-	-	-	F	S	Q	R	F	A	W	L	A	D	R	F	G	V	S	W	Q	L	N	L	A
H	L	V	F	T	E	F	K	Q	L	L	V	E	A	Q	K	V	G	D	A	V	T	F	Y	K	S	A	F	G	-	A	I	E	S	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	H	V	L	S	S	E	L	N	L	A	G	S	S	F	V	V	C	D	-	V	S	S	L	P	G	F	S	-	-	T	A	K	S	E	G	S	G	V	T	F	L	L	G	T	K	-	-	-	D	A	E	A	A	V	A	K	A	V	D	A	G	A	V	K	V	E	V	T	-	-	E	A	E	V	E	L	G	F	K	G	K	V	T	D	P	F	G	V	T	W	I	F	A	E	-