PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1p32a-  (  74 )    mhtdgdkafvdfLsdeikeerkiqkhktlpkMsggWeleln--gteAkLv
d1yqfa1  (  14 )       asdaaladaTrreleeemgrsdkpeqptppagWqvvrkpgtctFdLt
d3jv1a-  (  46 )    a--vsdqrlseatlrelederqraglpekpeipegWtidrkpgvthFtMr
                        aaaaaaaaaaaaaaaa                bbb        bbb

                             60        70        80        90        100 
d1p32a-  ( 122 )    rkvagekItVtFnInnSipltStPnFvVeViknddgkkAlvLdChypede
d1yqfa1  (  61 )    ksfegedLvVrYsTnqdsdkanshnIfVYItqkng--qTmqAdLsIee--
d3jv1a-  (  94 )    kshgdeeIILqLtgedrsneeitrtLdVLVvng-g--kAlvFgMsVed--
                    bbb  bbbbbbbb            bbbbbb       bbbbbbb     

                             110       120       130       140       150 
d1p32a-  ( 199 )    aesdiFsIrevSfqstges---------ewkdtny-tlnTdsldwalydh
d1yqfa1  ( 107 )    ---geLvLnnirfYdeaalAkdtgaeaeakrnelytGplvheldydllnc
d3jv1a-  ( 139 )    ---gefvinnvcfrhdGklAldtsaeAqfqksqlymgpdladledhlvds
                          bbbbbbbb                              aaaaaa

                             160       170       180       190  
d1p32a-  ( 239 )    lmdfLadrgVdntFAdeLvelStAlehqeyItfledlksfvksq
d1yqfa1  ( 154 )    vmtyLekrgVdekLGeFVvlYSfwAeqqdyeawLttmnkfAs  
d3jv1a-  ( 186 )    ftsyLsargVndtLAnFIdqFslwseqadyeewLssinkfvs  
                    aaaaaa     aaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1p32a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1p32a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Acidic mitochondrial matrix protein p32	Mitochondrial glycoprotein MAM33-like	Human (Homo sapiens) [TaxId: 9606]	view
d1yqfa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1yqfa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein Lmaj011689	Mitochondrial glycoprotein MAM33-like	Leishmania major [TaxId: 5664]	view
d3jv1a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3jv1a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Trypanosome (Trypanosoma brucei) [TaxId: 5691]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1p32a_	A	Q07021	GO:0005759
d1p32a_	A	Q07021	GO:0005759
d1yqfa1	A	Q4Q7K6	GO:0005759
d1yqfa1	A	Q4Q7K6	GO:0005759

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