PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1c8za-  ( 241 )    gsvdieVqdleeFAlrpApqgitIkCrItrdgdrgfptYfLhLdredgkv
d2q4ma-  (  24 )    g---gvVVd----pkycap--ypi-dAIvrk----dgnFvitdv---ngn
                                               bb         bbbb        

                             60        70        80        90        100 
d1c8za-  ( 296 )    fLLAGrrs---ktsnylISvdptdLsggdsyiGkLrsnlmgtkFTVYdng
d2q4ma-  (  63 )    llFkVkepvfglhdkRvLldg----s--gtpVVTLre----drWqVFrgg
                    bbbbbb         bbbb             bbbb      bbbbb   

                             110       120       130       140       150 
d1c8za-  ( 347 )    vnpqkAssstlesgtLrqELAAVcytnvlgfkgprkMSVIVPgmnmvher
d2q4ma-  ( 109 )    std------------qrdlLYtVkr---------tkLdVflghnk-----
                                      bbbbbb             bbbb         

                             160       170       180       190       200 
d1c8za-  ( 398 )    vcIrPrnehetLlarwqnkntesIieLqnktPvwnddtqsyvlnfhgrvt
d2q4ma-  ( 140 )    ---------------------dkrCdFrVkg---swl-------------
                                              bbb                     

                             210       220       230       240       250 
d1c8za-  ( 448 )    qasvknFQIIhgndpdyiVMqFgrvaedvFtMdYnypLCALQAFAIALSS
d2q4ma-  ( 154 )    ---erscvVyaGesd-aivAq-hrkgkdnFSvtvypnvDyAFIaSLvVIL
                           bbb       bbbb bb     bbbbb     aaaaaaaaaaa

                            
d1c8za-  ( 498 )    fdSklace
d2q4ma-  ( 208 )    Ddvnr   
                    aa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1c8za- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1c8za- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Transcriptional factor tubby, C-terminal domain	Transcriptional factor tubby, C-terminal domain	Mouse (Mus musculus) [TaxId: 10090]		view
d2q4ma- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2q4ma- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein At5g01750	At5g01750-like	Thale cress (Arabidopsis thaliana) [TaxId: 3702]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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G	S	V	D	I	E	V	Q	D	L	E	E	F	A	L	R	P	A	P	Q	G	I	T	I	K	C	R	I	T	R	D	G	D	R	G	F	P	T	Y	F	L	H	L	D	R	E	D	G	K	V	F	L	L	A	G	R	R	S	-	-	-	K	T	S	N	Y	L	I	S	V	D	P	T	D	L	S	G	G	D	S	Y	I	G	K	L	R	S	N	L	M	G	T	K	F	T	V	Y	D	N	G	V	N	P	Q	K	A	S	S	S	T	L	E	S	G	T	L	R	Q	E	L	A	A	V	C	Y	T	N	V	L	G	F	K	G	P	R	K	M	S	V	I	V	P	G	M	N	M	V	H	E	R	V	C	I	R	P	R	N	E	H	E	T	L	L	A	R	W	Q	N	K	N	T	E	S	I	I	E	L	Q	N	K	T	P	V	W	N	D	D	T	Q	S	Y	V	L	N	F	H	G	R	V	T	Q	A	S	V	K	N	F	Q	I	I	H	G	N	D	P	D	Y	I	V	M	Q	F	G	R	V	A	E	D	V	F	T	M	D	Y	N	Y	P	L	C	A	L	Q	A	F	A	I	A	L	S	S	F	D	S	K	L	A	C	E
G	-	-	-	G	V	V	V	D	-	-	-	-	P	K	Y	C	A	P	-	-	Y	P	I	-	D	A	I	V	R	K	-	-	-	-	D	G	N	F	V	I	T	D	V	-	-	-	N	G	N	L	L	F	K	V	K	E	P	V	F	G	L	H	D	K	R	V	L	L	D	G	-	-	-	-	S	-	-	G	T	P	V	V	T	L	R	E	-	-	-	-	D	R	W	Q	V	F	R	G	G	S	T	D	-	-	-	-	-	-	-	-	-	-	-	-	Q	R	D	L	L	Y	T	V	K	R	-	-	-	-	-	-	-	-	-	T	K	L	D	V	F	L	G	H	N	K	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	D	K	R	C	D	F	R	V	K	G	-	-	-	S	W	L	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	E	R	S	C	V	V	Y	A	G	E	S	D	-	A	I	V	A	Q	-	H	R	K	G	K	D	N	F	S	V	T	V	Y	P	N	V	D	Y	A	F	I	A	S	L	V	V	I	L	D	D	V	N	R	-	-	-

Member	Chain	UniProtKB	GO term

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G	S	V	D	I	E	V	Q	D	L	E	E	F	A	L	R	P	A	P	Q	G	I	T	I	K	C	R	I	T	R	D	G	D	R	G	F	P	T	Y	F	L	H	L	D	R	E	D	G	K	V	F	L	L	A	G	R	R	S	-	-	-	K	T	S	N	Y	L	I	S	V	D	P	T	D	L	S	G	G	D	S	Y	I	G	K	L	R	S	N	L	M	G	T	K	F	T	V	Y	D	N	G	V	N	P	Q	K	A	S	S	S	T	L	E	S	G	T	L	R	Q	E	L	A	A	V	C	Y	T	N	V	L	G	F	K	G	P	R	K	M	S	V	I	V	P	G	M	N	M	V	H	E	R	V	C	I	R	P	R	N	E	H	E	T	L	L	A	R	W	Q	N	K	N	T	E	S	I	I	E	L	Q	N	K	T	P	V	W	N	D	D	T	Q	S	Y	V	L	N	F	H	G	R	V	T	Q	A	S	V	K	N	F	Q	I	I	H	G	N	D	P	D	Y	I	V	M	Q	F	G	R	V	A	E	D	V	F	T	M	D	Y	N	Y	P	L	C	A	L	Q	A	F	A	I	A	L	S	S	F	D	S	K	L	A	C	E
G	-	-	-	G	V	V	V	D	-	-	-	-	P	K	Y	C	A	P	-	-	Y	P	I	-	D	A	I	V	R	K	-	-	-	-	D	G	N	F	V	I	T	D	V	-	-	-	N	G	N	L	L	F	K	V	K	E	P	V	F	G	L	H	D	K	R	V	L	L	D	G	-	-	-	-	S	-	-	G	T	P	V	V	T	L	R	E	-	-	-	-	D	R	W	Q	V	F	R	G	G	S	T	D	-	-	-	-	-	-	-	-	-	-	-	-	Q	R	D	L	L	Y	T	V	K	R	-	-	-	-	-	-	-	-	-	T	K	L	D	V	F	L	G	H	N	K	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	D	K	R	C	D	F	R	V	K	G	-	-	-	S	W	L	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	E	R	S	C	V	V	Y	A	G	E	S	D	-	A	I	V	A	Q	-	H	R	K	G	K	D	N	F	S	V	T	V	Y	P	N	V	D	Y	A	F	I	A	S	L	V	V	I	L	D	D	V	N	R	-	-	-

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G	S	V	D	I	E	V	Q	D	L	E	E	F	A	L	R	P	A	P	Q	G	I	T	I	K	C	R	I	T	R	D	G	D	R	G	F	P	T	Y	F	L	H	L	D	R	E	D	G	K	V	F	L	L	A	G	R	R	S	-	-	-	K	T	S	N	Y	L	I	S	V	D	P	T	D	L	S	G	G	D	S	Y	I	G	K	L	R	S	N	L	M	G	T	K	F	T	V	Y	D	N	G	V	N	P	Q	K	A	S	S	S	T	L	E	S	G	T	L	R	Q	E	L	A	A	V	C	Y	T	N	V	L	G	F	K	G	P	R	K	M	S	V	I	V	P	G	M	N	M	V	H	E	R	V	C	I	R	P	R	N	E	H	E	T	L	L	A	R	W	Q	N	K	N	T	E	S	I	I	E	L	Q	N	K	T	P	V	W	N	D	D	T	Q	S	Y	V	L	N	F	H	G	R	V	T	Q	A	S	V	K	N	F	Q	I	I	H	G	N	D	P	D	Y	I	V	M	Q	F	G	R	V	A	E	D	V	F	T	M	D	Y	N	Y	P	L	C	A	L	Q	A	F	A	I	A	L	S	S	F	D	S	K	L	A	C	E
G	-	-	-	G	V	V	V	D	-	-	-	-	P	K	Y	C	A	P	-	-	Y	P	I	-	D	A	I	V	R	K	-	-	-	-	D	G	N	F	V	I	T	D	V	-	-	-	N	G	N	L	L	F	K	V	K	E	P	V	F	G	L	H	D	K	R	V	L	L	D	G	-	-	-	-	S	-	-	G	T	P	V	V	T	L	R	E	-	-	-	-	D	R	W	Q	V	F	R	G	G	S	T	D	-	-	-	-	-	-	-	-	-	-	-	-	Q	R	D	L	L	Y	T	V	K	R	-	-	-	-	-	-	-	-	-	T	K	L	D	V	F	L	G	H	N	K	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	D	K	R	C	D	F	R	V	K	G	-	-	-	S	W	L	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	E	R	S	C	V	V	Y	A	G	E	S	D	-	A	I	V	A	Q	-	H	R	K	G	K	D	N	F	S	V	T	V	Y	P	N	V	D	Y	A	F	I	A	S	L	V	V	I	L	D	D	V	N	R	-	-	-

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G	S	V	D	I	E	V	Q	D	L	E	E	F	A	L	R	P	A	P	Q	G	I	T	I	K	C	R	I	T	R	D	G	D	R	G	F	P	T	Y	F	L	H	L	D	R	E	D	G	K	V	F	L	L	A	G	R	R	S	-	-	-	K	T	S	N	Y	L	I	S	V	D	P	T	D	L	S	G	G	D	S	Y	I	G	K	L	R	S	N	L	M	G	T	K	F	T	V	Y	D	N	G	V	N	P	Q	K	A	S	S	S	T	L	E	S	G	T	L	R	Q	E	L	A	A	V	C	Y	T	N	V	L	G	F	K	G	P	R	K	M	S	V	I	V	P	G	M	N	M	V	H	E	R	V	C	I	R	P	R	N	E	H	E	T	L	L	A	R	W	Q	N	K	N	T	E	S	I	I	E	L	Q	N	K	T	P	V	W	N	D	D	T	Q	S	Y	V	L	N	F	H	G	R	V	T	Q	A	S	V	K	N	F	Q	I	I	H	G	N	D	P	D	Y	I	V	M	Q	F	G	R	V	A	E	D	V	F	T	M	D	Y	N	Y	P	L	C	A	L	Q	A	F	A	I	A	L	S	S	F	D	S	K	L	A	C	E
G	-	-	-	G	V	V	V	D	-	-	-	-	P	K	Y	C	A	P	-	-	Y	P	I	-	D	A	I	V	R	K	-	-	-	-	D	G	N	F	V	I	T	D	V	-	-	-	N	G	N	L	L	F	K	V	K	E	P	V	F	G	L	H	D	K	R	V	L	L	D	G	-	-	-	-	S	-	-	G	T	P	V	V	T	L	R	E	-	-	-	-	D	R	W	Q	V	F	R	G	G	S	T	D	-	-	-	-	-	-	-	-	-	-	-	-	Q	R	D	L	L	Y	T	V	K	R	-	-	-	-	-	-	-	-	-	T	K	L	D	V	F	L	G	H	N	K	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	D	K	R	C	D	F	R	V	K	G	-	-	-	S	W	L	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	E	R	S	C	V	V	Y	A	G	E	S	D	-	A	I	V	A	Q	-	H	R	K	G	K	D	N	F	S	V	T	V	Y	P	N	V	D	Y	A	F	I	A	S	L	V	V	I	L	D	D	V	N	R	-	-	-