Superfamily : 54511 [ GFP-like ]
Class : Alpha and beta proteins (a+b)
Fold : GFP-like
# of Members : 7
Superposed Structure
solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x
 
                             10        20        30        40        50  
d1gl4a1  ( 399 )           gspqrVngkVkGrIfvgssqvpvvfenTdLhSyVvmnhGrSyT
d2c9ja-  (   7 )             nlsVsVyMkGnVnn------hefe-YdGigggdpnsGqfsL
d2g6ya-  (   3 )             ameIeCrItgtLng------veFe-LvgggegtpeqGrMtN
d3gb3a-  (   2 )    egGpalFqsdMtFkIfIdGeVng------qkFt-IvAdgsSkfpHGdfnV
d4q9wa1  (   2 )        gvIkpdMkIkLkMeGnVng------yaFv-IeGeGegkPydGtNtI
d6l27a-  (   3 )     mGeelFtgvvpilveldGdvng------hkFs-vsGegeGdAtyGkltl
d6m9za-  (   2 )           plPktHeLhIfgsFng------vkfd-MvgegtgnpneGsEeL
                              bbbbbbbbbbb        bbbb bbbbbbbb    bbbb

                             60        70        80        90        100 
d1gl4a1  ( 442 )    aIs-tIpetVGySLLPLApIGgIIGWMFAveqdgfk----NGfsITg---
d2c9ja-  (  41 )    kTkLrggkpLpFSYDIITmGF---FRAFTkYpegia----dYFkgSfp--
d2g6ya-  (  37 )    kMkStkg-aLtFspyLLShVM---FyHFgtYpsg----yeNPFlhAinn-
d3gb3a-  (  45 )    hAvCetg-kLpMSwkPIChLI---EpFFArypdgis----hFAqeCFp--
d4q9wa1  (  41 )    nLeVkegapLpFSYdILTtAF---NRAFTkYpddIp----nYFkqSFp--
d6l27a-  (  45 )    kFiSttg-klpvpWPtlvttl---vqCFSrYpdhMkrH--DFFkSAMp--
d6m9za-  (  38 )    kLkStng-pLkFSPyILVPHLGYGFNQYLpFp-d----gmSPFQaaMqde
                    bbbb         333                         aaaa     

                             110       120       130       140       150 
d1gl4a1  ( 484 )    GeFtRqAeVtFlghpgkLvLkQqFsgidehghLtIsTeLegrVpqIpy--
d2c9ja-  (  85 )    eAFqWnRrIeFedg-GvInMsSdItyk--dkvLhGdVwAlGv--nFppng
d2g6ya-  (  81 )    ggYtNtRiEkYedg-GvLhVsFsYrye--agrViGdFkVmGt--gFpedS
d3gb3a-  (  88 )    eGLsIdRtVrFenD-GtMtShHtYeld--dtcVvSrItVnCd--gFqpdg
d4q9wa1  (  85 )    eGYsWertMtFedk-GiVkVkSdIsLe--edsFiYeIyLkGe--nFppng
d6l27a-  (  90 )    eGYvqeRtifFkdD-GnYktrAevkFe--gdtlvnrielkGi--dFkedg
d6m9za-  (  82 )    sgYqVhRtLqYedg-AfVtAnLrYtYe--gshIkGeFqViGt--gFppdg
                      bbbbbbbbb     bbbbbbbbbbb    bbbbbbbbbbb        

                             160       170       180       190       200 
d1gl4a1  ( 532 )    -----gAsVhIepytelYhys--ssvItSsstreYtVmepdqdgaapsht
d2c9ja-  ( 130 )    pVmkneIv-mEepaeEtLtakn--gvLvGfCpKaYllkd--------gsy
d2g6ya-  ( 126 )    vIftdkIi-rSnatvEhLhpmgd-ndLdGsftRtFslrd--------ggy
d3gb3a-  ( 133 )    pImrdqLv-dIlpneThMfphgp-naVrQlAfiGFttad--------ggl
d4q9wa1  ( 130 )    pVmqkkTt-gWdastErMyvrd--gvLkGdVkHkLlleg--------ggy
d6l27a-  ( 135 )    nilghkleynYnshnvyimadkqkqGikvnFktrhnied--------gsv
d6m9za-  ( 127 )    pVmtnkLt-aldwsvVkFvYpnd-ktIlStfdKtYtTtd--------gkr
                          bb bb  bbbbbbb     bbbbbbbbbbbb            b

                             210       220       230       240       250 
d1gl4a1  ( 575 )    hiYqWrQtItFqecahddarpalp----stqqLsVdsVfVlYnke---er
d2c9ja-  ( 169 )    YyGhMtTfYrSkks----gqplPg-----fHfIkhr-lvktkv--epgfk
d2g6ya-  ( 166 )    YsSvVdShMhFks-----aIhpsIlqnggpMfafrr-veEdHs-----nt
d3gb3a-  ( 173 )    mmGhFdSkMtFngs---raIeiPg-----pHfVtii-TkQmrdtsdkr-d
d4q9wa1  ( 169 )    YrVdFkTiYrAkk-----aVklPd-----yHfVdhr-ieilny--dkdyn
d6l27a-  ( 177 )    qlAdHyqqntPigd---gpvllPd-----nHylstq-Salskdpnekr-d
d6m9za-  ( 167 )    YqCtFrEnNtFak-----pMaadilqk-qpMfIfHk-teLqhsn----na
                    bbbbbbbbbbb                   bbbbbb bbbb         

                             260       270 
d1gl4a1  ( 618 )    iLrYaLsNsIGpvr       
d2c9ja-  ( 207 )    mVeQaeyAtAhvc-----dlp
d2g6ya-  ( 205 )    eLgIveyQhAfktp       
d3gb3a-  ( 213 )    HVcQrevAyAhsvpritsaig
d4q9wa1  ( 206 )    kVtVyesAvArns        
d6l27a-  ( 217 )    HMvllefvtAagith      
d6m9za-  ( 206 )    eLtFkEkQtAfsdm       
                    bbbbbbbbbbb
 

 

Domain IDNameFamilySourceDomainSTRING-DB
Domain G2 of nidogen-1Domain G2 of nidogen-1Mouse (Mus musculus) [TaxId: 10090]view
automated matchesautomated matchesCerianthus membranaceus [TaxId: 208460]view
automated matchesautomated matchesPontellina plumata [TaxId: 239963]view
automated matchesautomated matchesAnthomedusae sp. [TaxId: 328397]view
automated matchesautomated matchesClavularia sp. [TaxId: 86521]view
Green fluorescent protein, GFPFluorescent proteinsJellyfish (Aequorea victoria) [TaxId: 6100]view
automated matchesautomated matchesBranchiostoma floridae [TaxId: 7739]view

 

No outliers

FeatureDownload
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

 

10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270
- - - - - - - G S P Q R V N G K V K G R I F V G S S Q V P V V F E N T D L H S Y V V M N H G R S Y T A I S - T I P E T V G Y S L L P L A P I G G I I G W M F A V E Q D G F K - - - - N G F S I T G - - - G E F T R Q A E V T F L G H P G K L V L K Q Q F S G I D E H G H L T I S T E L E G R V P Q I P Y - - - - - - - G A S V H I E P Y T E L Y H Y S - - S S V I T S S S T R E Y T V M E P D Q D G A A P S H T H I Y Q W R Q T I T F Q E C A H D D A R P A L P - - - - S T Q Q L S V D S V F V L Y N K E - - - E R I L R Y A L S N S I G P V R - - - - - - -
- - - - - - - - - N L S V S V Y M K G N V N N - - - - - - H E F E - Y D G I G G G D P N S G Q F S L K T K L R G G K P L P F S Y D I I T M G F - - - F R A F T K Y P E G I A - - - - D Y F K G S F P - - E A F Q W N R R I E F E D G - G V I N M S S D I T Y K - - D K V L H G D V W A L G V - - N F P P N G P V M K N E I V - M E E P A E E T L T A K N - - G V L V G F C P K A Y L L K D - - - - - - - - G S Y Y Y G H M T T F Y R S K K S - - - - G Q P L P G - - - - - F H F I K H R - L V K T K V - - E P G F K M V E Q A E Y A T A H V C - - - - - D L P
- - - - - - - - - A M E I E C R I T G T L N G - - - - - - V E F E - L V G G G E G T P E Q G R M T N K M K S T K G - A L T F S P Y L L S H V M - - - F Y H F G T Y P S G - - - - Y E N P F L H A I N N - G G Y T N T R I E K Y E D G - G V L H V S F S Y R Y E - - A G R V I G D F K V M G T - - G F P E D S V I F T D K I I - R S N A T V E H L H P M G D - N D L D G S F T R T F S L R D - - - - - - - - G G Y Y S S V V D S H M H F K S - - - - - A I H P S I L Q N G G P M F A F R R - V E E D H S - - - - - N T E L G I V E Y Q H A F K T P - - - - - - -
E G G P A L F Q S D M T F K I F I D G E V N G - - - - - - Q K F T - I V A D G S S K F P H G D F N V H A V C E T G - K L P M S W K P I C H L I - - - E P F F A R Y P D G I S - - - - H F A Q E C F P - - E G L S I D R T V R F E N D - G T M T S H H T Y E L D - - D T C V V S R I T V N C D - - G F Q P D G P I M R D Q L V - D I L P N E T H M F P H G P - N A V R Q L A F I G F T T A D - - - - - - - - G G L M M G H F D S K M T F N G S - - - R A I E I P G - - - - - P H F V T I I - T K Q M R D T S D K R - D H V C Q R E V A Y A H S V P R I T S A I G
- - - - G V I K P D M K I K L K M E G N V N G - - - - - - Y A F V - I E G E G E G K P Y D G T N T I N L E V K E G A P L P F S Y D I L T T A F - - - N R A F T K Y P D D I P - - - - N Y F K Q S F P - - E G Y S W E R T M T F E D K - G I V K V K S D I S L E - - E D S F I Y E I Y L K G E - - N F P P N G P V M Q K K T T - G W D A S T E R M Y V R D - - G V L K G D V K H K L L L E G - - - - - - - - G G Y Y R V D F K T I Y R A K K - - - - - A V K L P D - - - - - Y H F V D H R - I E I L N Y - - D K D Y N K V T V Y E S A V A R N S - - - - - - - -
- M G E E L F T G V V P I L V E L D G D V N G - - - - - - H K F S - V S G E G E G D A T Y G K L T L K F I S T T G - K L P V P W P T L V T T L - - - V Q C F S R Y P D H M K R H - - D F F K S A M P - - E G Y V Q E R T I F F K D D - G N Y K T R A E V K F E - - G D T L V N R I E L K G I - - D F K E D G N I L G H K L E Y N Y N S H N V Y I M A D K Q K Q G I K V N F K T R H N I E D - - - - - - - - G S V Q L A D H Y Q Q N T P I G D - - - G P V L L P D - - - - - N H Y L S T Q - S A L S K D P N E K R - D H M V L L E F V T A A G I T H - - - - - -
- - - - - - - P L P K T H E L H I F G S F N G - - - - - - V K F D - M V G E G T G N P N E G S E E L K L K S T N G - P L K F S P Y I L V P H L G Y G F N Q Y L P F P - D - - - - G M S P F Q A A M Q D E S G Y Q V H R T L Q Y E D G - A F V T A N L R Y T Y E - - G S H I K G E F Q V I G T - - G F P P D G P V M T N K L T - A L D W S V V K F V Y P N D - K T I L S T F D K T Y T T T D - - - - - - - - G K R Y Q C T F R E N N T F A K - - - - - P M A A D I L Q K - Q P M F I F H K - T E L Q H S N - - - - N A E L T F K E K Q T A F S D M - - - - - - -

 

 

 

 

 

Member Chain UniProtKB GO term
 
Contact: Prof. R. Sowdhamini - mini@ncbs.res.in