Superfamily : 54447 [ ssDNA-binding transcriptional regulator domain ]
Class : Alpha and beta proteins (a+b)
Fold : ssDNA-binding transcriptional regulator domain
# of Members : 7
solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x
 
                             10        20        30        40        50  
d1pcfa1  (  63 )                                                      
d2giaa1  (  56 )    wrrpslaqqrarraqlppAfdVvhwndedisrGhlLrVLhrd--------
d2giab1  (  28 )                   slpkfeihdvrd-dpaeGtMTrVavdg--------
d2it9a1  (   2 )                                                      
d2nvna1  (   2 )                                                      
d3r9za-  (  53 )               regrvfapysVfkg-------aAALsAeprlPtfnrlds
d4agha-  (  38 )                                                      
                                                                      

                             60        70        80        90        100 
d1pcfa1  (  63 )                                                      
d2giaa1  (  98 )    --------tfVVLdyhrQarmlteeg----------nkae---rvvsvmL
d2giab1  (  54 )    --------klLlIsqypQlg------prkvdpndlspqfdadrr-IsVrL
d2it9a1  (   2 )                ikkeg----pgwriifdssrdnfsTlIGGe--twaieL
d2nvna1  (   2 )              grilreg----agwrLgwdeta-rypglVgtt--dwaveL
d3r9za-  (  85 )    ggvklnrrGVImLtFwpsvge---------------rkydwekr-qlFaL
d4agha-  (  38 )                                                      
                                 bbbb                             bbb 

                             110       120       130       140       150 
d1pcfa1  (  63 )                                       mfqigkmryvsvrdf
d2giaa1  ( 127 )    pavytarFlaVLeg-----------rse---kVevhsr---ytnatFtpn
d2giab1  (  89 )    rhvDLayLvgVCke-----------rvp---rhrMetk---aYtLdFeks
d2it9a1  (  34 )    dksewkiLveVv-eLCdqyklvelg---editleler----pWlAiLngd
d2nvna1  (  36 )    taaE-adFcrLVqqLaetIaaiapelpeerlqieaes---alLwLeAeGf
d3r9za-  ( 119 )    sateVgsLisMgtr-------------d---sseffhdpqvrkSLsIkpn
d4agha-  (  38 )                             gsqvdaegnpFweisdkrrvgisqf
                          aaa                       bbbb      bbbbbbb 

                             160       170       180       190       200 
d1pcfa1  (  78 )    kg--kvlIdireywmdpegemkpgrkgislnpeqwsqlkeqisdiddavr
d2giaa1  ( 160 )    paapytftLkCtStrpd--etfeW--tVeFdvaeSlmLqrfLtqalhynt
d2giab1  ( 122 )    a---qgYhLhgkVhrvasqrmedW--svkFdnhfavtLehfLesAldeSf
d2it9a1  (  82 )    qy---gWnLrLiLsan-----rga--evyWprhvTnnvvnArsd      
d2nvna1  (  84 )    ad---ayeLrLiLasd-----rrv--eacWpaaAVpaLvaAThtlgf   
d3r9za-  ( 161 )    a-dGsGYfIsLSvvnnnlktndrf--tVpVttaeFavMrtaFsfalphIm
d4agha-  (  63 )    kk--mdfinireyyeag-gemkpgkkgigltvdqytaflkaipainaelr
                         bbbbbbbb        bbb  bbbb  aaaaaaaaaaaaaaaa  

                            
d1pcfa1  ( 126 )    kl      
d2giaa1  ( 218 )    Gfar    
d2giab1  ( 167 )    gfrqh-ya
d2it9a1                     
d2nvna1                     
d3r9za-  ( 208 )    Gwdrf-tn
d4agha-  ( 110 )    srghditd
                            

 

 

Domain IDNameFamilySourceDomainSTRING-DB
Transcriptional coactivator PC4 C-terminal domainTranscriptional coactivator PC4 C-terminal domainHuman (Homo sapiens) [TaxId: 9606]view
Guide RNA binding protein gBP25Guide RNA binding protein gBPTrypanosome (Trypanosoma brucei) [TaxId: 5691]view
GBP21Guide RNA binding protein gBPTrypanosome (Trypanosoma brucei) [TaxId: 5691]view
Hypothetical protein PMN2A_0962PMN2A0962/syc2379c-likeProchlorococcus marinus [TaxId: 1219]view
Hypothetical protein syc2379_cPMN2A0962/syc2379c-likeSynechococcus elongatus PCC 7942 [TaxId: 1140]view
automated matchesautomated matchesPotato (Solanum tuberosum) [TaxId: 4113]view
automated matchesautomated matchesMagnaporthe oryzae [TaxId: 318829]view

 

No outliers

FeatureDownload
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

 

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W R R P S L A Q Q R A R R A Q L P P A F D V V H W N D E D I S R G H L L R V L H R D - - - - - - - - - - - - - - - - T F V V L D Y H R Q A R M L T E E G - - - - - - - - - - N K A E - - - R V V S V M L P A V Y T A R F L A V L E G - - - - - - - - - - - R S E - - - K V E V H S R - - - Y T N A T F T P N P A A P Y T F T L K C T S T R P D - - E T F E W - - T V E F D V A E S L M L Q R F L T Q A L H Y N T G F A R - - - -
- - - - - - - - - - - - - - - S L P K F E I H D V R D - D P A E G T M T R V A V D G - - - - - - - - - - - - - - - - K L L L I S Q Y P Q L G - - - - - - P R K V D P N D L S P Q F D A D R R - I S V R L R H V D L A Y L V G V C K E - - - - - - - - - - - R V P - - - R H R M E T K - - - A Y T L D F E K S A - - - Q G Y H L H G K V H R V A S Q R M E D W - - S V K F D N H F A V T L E H F L E S A L D E S F G F R Q H - Y A
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - I K K E G - - - - P G W R I I F D S S R D N F S T L I G G E - - T W A I E L D K S E W K I L V E V V - E L C D Q Y K L V E L G - - - E D I T L E L E R - - - - P W L A I L N G D Q Y - - - G W N L R L I L S A N - - - - - R G A - - E V Y W P R H V T N N V V N A R S D - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - G R I L R E G - - - - A G W R L G W D E T A - R Y P G L V G T T - - D W A V E L T A A E - A D F C R L V Q Q L A E T I A A I A P E L P E E R L Q I E A E S - - - A L L W L E A E G F A D - - - A Y E L R L I L A S D - - - - - R R V - - E A C W P A A A V P A L V A A T H T L G F - - - - - - - - - - -
- - - - - - - - - - - R E G R V F A P Y S V F K G - - - - - - - A A A L S A E P R L P T F N R L D S G G V K L N R R G V I M L T F W P S V G E - - - - - - - - - - - - - - - R K Y D W E K R - Q L F A L S A T E V G S L I S M G T R - - - - - - - - - - - - - D - - - S S E F F H D P Q V R K S L S I K P N A - D G S G Y F I S L S V V N N N L K T N D R F - - T V P V T T A E F A V M R T A F S F A L P H I M G W D R F - T N
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - G S Q V D A E G N P F W E I S D K R R V G I S Q F K K - - M D F I N I R E Y Y E A G - G E M K P G K K G I G L T V D Q Y T A F L K A I P A I N A E L R S R G H D I T D

 

 

 

 

 

Member Chain UniProtKB GO term
d2giaa1 A Q952G2 GO:0003677
d2giaa1 A Q952G2 GO:0006355
d2giaa1 A P90629 GO:0003677
d2giaa1 A P90629 GO:0006355
d2giaa1 A Q952G2 GO:0003677
d2giaa1 A Q952G2 GO:0006355
d2giaa1 A P90629 GO:0003677
d2giaa1 A P90629 GO:0006355
d2giab1 B Q952G2 GO:0003677
d2giab1 B Q952G2 GO:0006355
d2giab1 B Q952G2 GO:0003723
d2giab1 B Q952G2 GO:0003729
d2giab1 B Q952G2 GO:0005515
d2giab1 B Q952G2 GO:0005739
d2giab1 B Q952G2 GO:0010608
d2giab1 B Q952G2 GO:0016556
d2giab1 B Q952G2 GO:0031019
d2giab1 B Q952G2 GO:0031981
d2giab1 B P90629 GO:0003677
d2giab1 B P90629 GO:0006355
d2giab1 B P90629 GO:0003723
d2giab1 B P90629 GO:0003729
d2giab1 B P90629 GO:0005515
d2giab1 B P90629 GO:0005739
d2giab1 B P90629 GO:0010608
d2giab1 B P90629 GO:0016556
d2giab1 B P90629 GO:0031019
d2giab1 B P90629 GO:0031981
d2giab1 B Q952G2 GO:0003677
d2giab1 B Q952G2 GO:0006355
d2giab1 B Q952G2 GO:0003723
d2giab1 B Q952G2 GO:0003729
d2giab1 B Q952G2 GO:0005515
d2giab1 B Q952G2 GO:0005739
d2giab1 B Q952G2 GO:0010608
d2giab1 B Q952G2 GO:0016556
d2giab1 B Q952G2 GO:0031019
d2giab1 B Q952G2 GO:0031981
d2giab1 B P90629 GO:0003677
d2giab1 B P90629 GO:0006355
d2giab1 B P90629 GO:0003723
d2giab1 B P90629 GO:0003729
d2giab1 B P90629 GO:0005515
d2giab1 B P90629 GO:0005739
d2giab1 B P90629 GO:0010608
d2giab1 B P90629 GO:0016556
d2giab1 B P90629 GO:0031019
d2giab1 B P90629 GO:0031981
d2it9a1 A Q46J75 GO:0003677
d2it9a1 A Q46J75 GO:0006355
d2nvna1 A Q31MH7 GO:0003677
d2nvna1 A Q31MH7 GO:0006355