PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1eeja2  (   1 )    ddaaIqqtLakmgikssdiqpApvagmktVlTns----gvlyItddGkhi
d1t3ba2  (   2 )     daaIlis---------viSp---sgiktAvTq-----giLyVeg---yl
d1v58a2  (   2 )    elpapVkaiekqgitiiktfdAp-ggmkGYlGkyqdmgvtIyltpdgkhA
                                                                      

                             60   
d1eeja2  (  47 )    iqgpmydvsgtapv
d1t3ba2  (  47 )    fegklye--lngpv
d1v58a2  (  51 )    isgymynek---ge

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1eeja2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1eeja2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Disulfide bond isomerase, DsbC, N-terminal domain	DsbC/DsbG N-terminal domain-like	Escherichia coli [TaxId: 562]	view
d1t3ba2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1t3ba2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Disulfide bond isomerase, DsbC, N-terminal domain	DsbC/DsbG N-terminal domain-like	Haemophilus influenzae [TaxId: 727]	view
d1v58a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1v58a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Thiol:disulfide interchange protein DsbG, N-terminal domain	DsbC/DsbG N-terminal domain-like	Escherichia coli [TaxId: 562]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60
D	D	A	A	I	Q	Q	T	L	A	K	M	G	I	K	S	S	D	I	Q	P	A	P	V	A	G	M	K	T	V	L	T	N	S	-	-	-	-	G	V	L	Y	I	T	D	D	G	K	H	I	I	Q	G	P	M	Y	D	V	S	G	T	A	P	V
-	D	A	A	I	L	I	S	-	-	-	-	-	-	-	-	-	V	I	S	P	-	-	-	S	G	I	K	T	A	V	T	Q	-	-	-	-	-	G	I	L	Y	V	E	G	-	-	-	Y	L	F	E	G	K	L	Y	E	-	-	L	N	G	P	V
E	L	P	A	P	V	K	A	I	E	K	Q	G	I	T	I	I	K	T	F	D	A	P	-	G	G	M	K	G	Y	L	G	K	Y	Q	D	M	G	V	T	I	Y	L	T	P	D	G	K	H	A	I	S	G	Y	M	Y	N	E	K	-	-	-	G	E

Member	Chain	UniProtKB	GO term
d1eeja2	A	P0AEG6	GO:0003756
d1eeja2	A	P0AEG6	GO:0015035
d1eeja2	A	P0AEG6	GO:0015036
d1eeja2	A	P0AEG6	GO:0030288
d1eeja2	A	P0AEG6	GO:0042597
d1eeja2	A	P0AEG6	GO:0042803
d1eeja2	A	P0AEG6	GO:0046688
d1eeja2	A	P0AEG6	GO:0061077
d1t3ba2	A	P45111	GO:0042597
d1v58a2	A	P77202	GO:0003756
d1v58a2	A	P77202	GO:0030288
d1v58a2	A	P77202	GO:0042597
d1v58a2	A	P77202	GO:0042803
d1v58a2	A	P77202	GO:0061077

									10										20										30										40										50										60
D	D	A	A	I	Q	Q	T	L	A	K	M	G	I	K	S	S	D	I	Q	P	A	P	V	A	G	M	K	T	V	L	T	N	S	-	-	-	-	G	V	L	Y	I	T	D	D	G	K	H	I	I	Q	G	P	M	Y	D	V	S	G	T	A	P	V
-	D	A	A	I	L	I	S	-	-	-	-	-	-	-	-	-	V	I	S	P	-	-	-	S	G	I	K	T	A	V	T	Q	-	-	-	-	-	G	I	L	Y	V	E	G	-	-	-	Y	L	F	E	G	K	L	Y	E	-	-	L	N	G	P	V
E	L	P	A	P	V	K	A	I	E	K	Q	G	I	T	I	I	K	T	F	D	A	P	-	G	G	M	K	G	Y	L	G	K	Y	Q	D	M	G	V	T	I	Y	L	T	P	D	G	K	H	A	I	S	G	Y	M	Y	N	E	K	-	-	-	G	E

									10										20										30										40										50										60
D	D	A	A	I	Q	Q	T	L	A	K	M	G	I	K	S	S	D	I	Q	P	A	P	V	A	G	M	K	T	V	L	T	N	S	-	-	-	-	G	V	L	Y	I	T	D	D	G	K	H	I	I	Q	G	P	M	Y	D	V	S	G	T	A	P	V
-	D	A	A	I	L	I	S	-	-	-	-	-	-	-	-	-	V	I	S	P	-	-	-	S	G	I	K	T	A	V	T	Q	-	-	-	-	-	G	I	L	Y	V	E	G	-	-	-	Y	L	F	E	G	K	L	Y	E	-	-	L	N	G	P	V
E	L	P	A	P	V	K	A	I	E	K	Q	G	I	T	I	I	K	T	F	D	A	P	-	G	G	M	K	G	Y	L	G	K	Y	Q	D	M	G	V	T	I	Y	L	T	P	D	G	K	H	A	I	S	G	Y	M	Y	N	E	K	-	-	-	G	E

									10										20										30										40										50										60
D	D	A	A	I	Q	Q	T	L	A	K	M	G	I	K	S	S	D	I	Q	P	A	P	V	A	G	M	K	T	V	L	T	N	S	-	-	-	-	G	V	L	Y	I	T	D	D	G	K	H	I	I	Q	G	P	M	Y	D	V	S	G	T	A	P	V
-	D	A	A	I	L	I	S	-	-	-	-	-	-	-	-	-	V	I	S	P	-	-	-	S	G	I	K	T	A	V	T	Q	-	-	-	-	-	G	I	L	Y	V	E	G	-	-	-	Y	L	F	E	G	K	L	Y	E	-	-	L	N	G	P	V
E	L	P	A	P	V	K	A	I	E	K	Q	G	I	T	I	I	K	T	F	D	A	P	-	G	G	M	K	G	Y	L	G	K	Y	Q	D	M	G	V	T	I	Y	L	T	P	D	G	K	H	A	I	S	G	Y	M	Y	N	E	K	-	-	-	G	E