PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2bvca1  (   4 )    k--tpddVfklakdekVeyVDVrFcDlpgimqhftipasaFdksVfddGl
d4lnoa1  (   2 )    akytredIeklVkeenVkyIrLqFtDilgtiknveipvsql-gkALdnkv
d5zlia1  (   8 )    seskIkeFfefCkeneVefVdFrFsdikgtwnhiaysfgaLthgmLkeGI
                        aaaaaaaaaa    bbbbbbb     bbbbbbb333   aaa    

                             60        70        80        90        100 
d2bvca1  (  52 )    afdGssirgfqsihesdMlLlPdpet---AriDpfra--akTLnInFfvh
d4lnoa1  (  51 )    mfdGssieGfvrieesdMyLyPd---lntFvifpwtaekgkvArFiCdiy
d5zlia1  (  58 )    pfdAScfkgwqgiehsdMiLtPdLvr---yfidpfsa--dvsVVVfCdvy
                    bbb             bbbbbb        bb         bbbbbbbbb

                            
d2bvca1  (  97 )    dpftlepy
d4lnoa1  (  98 )    np-dgtpf
d5zlia1  ( 103 )    dvyknqpy

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d2bvca1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2bvca1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Mycobacterium tuberculosis [TaxId: 83332]	view
d4lnoa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4lnoa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Bacillus subtilis [TaxId: 1423]	view
d5zlia1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5zlia1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Helicobacter pylori [TaxId: 85962]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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S	E	S	K	I	K	E	F	F	E	F	C	K	E	N	E	V	E	F	V	D	F	R	F	S	D	I	K	G	T	W	N	H	I	A	Y	S	F	G	A	L	T	H	G	M	L	K	E	G	I	P	F	D	A	S	C	F	K	G	W	Q	G	I	E	H	S	D	M	I	L	T	P	D	L	V	R	-	-	-	Y	F	I	D	P	F	S	A	-	-	D	V	S	V	V	V	F	C	D	V	Y	D	V	Y	K	N	Q	P	Y

Member	Chain	UniProtKB	GO term
d2bvca1	A	P9WN39	GO:0000287
d2bvca1	A	P9WN39	GO:0001968
d2bvca1	A	P9WN39	GO:0003824
d2bvca1	A	P9WN39	GO:0004356
d2bvca1	A	P9WN39	GO:0005524
d2bvca1	A	P9WN39	GO:0005576
d2bvca1	A	P9WN39	GO:0005737
d2bvca1	A	P9WN39	GO:0005829
d2bvca1	A	P9WN39	GO:0005886
d2bvca1	A	P9WN39	GO:0006542
d2bvca1	A	P9WN39	GO:0009274
d2bvca1	A	P9WN39	GO:0010756
d2bvca1	A	P9WN39	GO:0016020
d2bvca1	A	P9WN39	GO:0016874
d2bvca1	A	P9WN39	GO:0019740
d2bvca1	A	P9WN39	GO:0035375
d2bvca1	A	P9WN39	GO:0046872
d2bvca1	A	P9WN39	GO:0051260
d2bvca1	A	P9WN39	GO:0000287
d2bvca1	A	P9WN39	GO:0001968
d2bvca1	A	P9WN39	GO:0003824
d2bvca1	A	P9WN39	GO:0004356
d2bvca1	A	P9WN39	GO:0005524
d2bvca1	A	P9WN39	GO:0005576
d2bvca1	A	P9WN39	GO:0005737
d2bvca1	A	P9WN39	GO:0005829
d2bvca1	A	P9WN39	GO:0005886
d2bvca1	A	P9WN39	GO:0006542
d2bvca1	A	P9WN39	GO:0009274
d2bvca1	A	P9WN39	GO:0010756
d2bvca1	A	P9WN39	GO:0016020
d2bvca1	A	P9WN39	GO:0016874
d2bvca1	A	P9WN39	GO:0019740
d2bvca1	A	P9WN39	GO:0035375
d2bvca1	A	P9WN39	GO:0046872
d2bvca1	A	P9WN39	GO:0051260

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A	K	Y	T	R	E	D	I	E	K	L	V	K	E	E	N	V	K	Y	I	R	L	Q	F	T	D	I	L	G	T	I	K	N	V	E	I	P	V	S	Q	L	-	G	K	A	L	D	N	K	V	M	F	D	G	S	S	I	E	G	F	V	R	I	E	E	S	D	M	Y	L	Y	P	D	-	-	-	L	N	T	F	V	I	F	P	W	T	A	E	K	G	K	V	A	R	F	I	C	D	I	Y	N	P	-	D	G	T	P	F
S	E	S	K	I	K	E	F	F	E	F	C	K	E	N	E	V	E	F	V	D	F	R	F	S	D	I	K	G	T	W	N	H	I	A	Y	S	F	G	A	L	T	H	G	M	L	K	E	G	I	P	F	D	A	S	C	F	K	G	W	Q	G	I	E	H	S	D	M	I	L	T	P	D	L	V	R	-	-	-	Y	F	I	D	P	F	S	A	-	-	D	V	S	V	V	V	F	C	D	V	Y	D	V	Y	K	N	Q	P	Y

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A	K	Y	T	R	E	D	I	E	K	L	V	K	E	E	N	V	K	Y	I	R	L	Q	F	T	D	I	L	G	T	I	K	N	V	E	I	P	V	S	Q	L	-	G	K	A	L	D	N	K	V	M	F	D	G	S	S	I	E	G	F	V	R	I	E	E	S	D	M	Y	L	Y	P	D	-	-	-	L	N	T	F	V	I	F	P	W	T	A	E	K	G	K	V	A	R	F	I	C	D	I	Y	N	P	-	D	G	T	P	F
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A	K	Y	T	R	E	D	I	E	K	L	V	K	E	E	N	V	K	Y	I	R	L	Q	F	T	D	I	L	G	T	I	K	N	V	E	I	P	V	S	Q	L	-	G	K	A	L	D	N	K	V	M	F	D	G	S	S	I	E	G	F	V	R	I	E	E	S	D	M	Y	L	Y	P	D	-	-	-	L	N	T	F	V	I	F	P	W	T	A	E	K	G	K	V	A	R	F	I	C	D	I	Y	N	P	-	D	G	T	P	F
S	E	S	K	I	K	E	F	F	E	F	C	K	E	N	E	V	E	F	V	D	F	R	F	S	D	I	K	G	T	W	N	H	I	A	Y	S	F	G	A	L	T	H	G	M	L	K	E	G	I	P	F	D	A	S	C	F	K	G	W	Q	G	I	E	H	S	D	M	I	L	T	P	D	L	V	R	-	-	-	Y	F	I	D	P	F	S	A	-	-	D	V	S	V	V	V	F	C	D	V	Y	D	V	Y	K	N	Q	P	Y