PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1i17a-  (   1 )          rvaenrpGafikqgrkldidFg-aeGnryYaanywqFPDgiyye
d1u3ma1  ( 128 )    vvgglg------gyamgrvmsgmnyhfdrpdeyrwwsensaryPnrvyyr
d4hlsa-  ( 126 )         g------gymlgsamsrplIhFgndyedryYrenmyrYpnqVyYr
                                  bb             aaaaaaaaaa        b  

                             60        70        80        90        100 
d1i17a-  (  44 )    gçseanvtkemlvtsÇvnatqaAnqaeFsrekq------------dsklH
d1u3ma1  ( 172 )    dys-spvpqdvfvadÇfnitvteys-iGpaakkntseavaaanqteveme
d4hlsa-  ( 165 )    pvd-qynnqnsFvhdÇvniTvkqhtvttttkgenFt-----------etD
                            aaaaaaaaaaaaaaa                        aaa

                             110       120    
d1i17a-  (  82 )    qrvlwrlikeiÇsakhÇdfwlergaa
d1u3ma1  ( 220 )    nkvvtkvireMÇvqqyreyrlas   
d4hlsa-  ( 203 )    ikIMerVVeqMÇitQyqqes      
                    aaaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1i17a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1i17a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Prion-like protein Doppel	Prion-like	Mouse (Mus musculus) [TaxId: 10090]	view
d1u3ma1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1u3ma1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Prion protein domain	Prion-like	Chicken (Gallus gallus) [TaxId: 9031]	view
d4hlsa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4hlsa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Prion-like	Rabbit (Oryctolagus cuniculus) [TaxId: 9986]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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V	V	G	G	L	G	-	-	-	-	-	-	G	Y	A	M	G	R	V	M	S	G	M	N	Y	H	F	D	R	P	D	E	Y	R	W	W	S	E	N	S	A	R	Y	P	N	R	V	Y	Y	R	D	Y	S	-	S	P	V	P	Q	D	V	F	V	A	D	C	F	N	I	T	V	T	E	Y	S	-	I	G	P	A	A	K	K	N	T	S	E	A	V	A	A	A	N	Q	T	E	V	E	M	E	N	K	V	V	T	K	V	I	R	E	M	C	V	Q	Q	Y	R	E	Y	R	L	A	S	-	-	-
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Member	Chain	UniProtKB	GO term
d1i17a_	A	Q9QUG3	GO:0016020
d1i17a_	A	Q9QUG3	GO:0051260

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V	V	G	G	L	G	-	-	-	-	-	-	G	Y	A	M	G	R	V	M	S	G	M	N	Y	H	F	D	R	P	D	E	Y	R	W	W	S	E	N	S	A	R	Y	P	N	R	V	Y	Y	R	D	Y	S	-	S	P	V	P	Q	D	V	F	V	A	D	C	F	N	I	T	V	T	E	Y	S	-	I	G	P	A	A	K	K	N	T	S	E	A	V	A	A	A	N	Q	T	E	V	E	M	E	N	K	V	V	T	K	V	I	R	E	M	C	V	Q	Q	Y	R	E	Y	R	L	A	S	-	-	-
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V	V	G	G	L	G	-	-	-	-	-	-	G	Y	A	M	G	R	V	M	S	G	M	N	Y	H	F	D	R	P	D	E	Y	R	W	W	S	E	N	S	A	R	Y	P	N	R	V	Y	Y	R	D	Y	S	-	S	P	V	P	Q	D	V	F	V	A	D	C	F	N	I	T	V	T	E	Y	S	-	I	G	P	A	A	K	K	N	T	S	E	A	V	A	A	A	N	Q	T	E	V	E	M	E	N	K	V	V	T	K	V	I	R	E	M	C	V	Q	Q	Y	R	E	Y	R	L	A	S	-	-	-
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