PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1a2pa-  (   3 )                      vintfdgVAdyLqtyhklPdnYitkseAqalg
d1aqza-  (   1 )        atWtÇiNqqledkrllYsqakAesNShhAplsdg----ktgSsyPh
d1i0va-  (   1 )       açdytÇg-------snçYsssdVstaqaaGy-lhedgetvgsnsYPh
d1t2ha-  (   1 )                   dvsgtvçlsaLppeAt----------dTLnliasd
d3agna-  (   1 )    çdipqsTnÇg-------gnvYsnddIntAiqgAlddvangdrPd--nyph
                                       bb aaaaaaaaaa                  

                             60        70        80        90        100 
d1a2pa-  (  35 )    wvaskGnLadvapgkSIGgdifsnregkLpgks---------grtWreAD
d1aqza-  (  50 )    wft-nGydgnGklikgrtpikFgkadÇdrppkhsqnGmgkdDhYlLEFPT
d1i0va-  (  42 )    -Yn-n--yeg---------fdFsv-----------------sspyyeWPI
d1t2ha-  (  26 )    Gp----fpys------qDgvvfqnresvLptqs--------ygyYheyTV
d3agna-  (  42 )    qYy-deased---------ItlçÇg----------------sgpwsEFPL
                                                                bbbbb 

                             110       120       130       140       150 
d1a2pa-  (  76 )    InYtsg----------frnsdRILySs-dw--lIykTtdhyq---tFtki
d1aqza-  (  99 )    fpdGhdYkfdskkpkenpgpARVIYtypnkvfÇGIVAhq-rgnqgdlrlÇ
d1i0va-  (  62 )    lssgdvYsg-g-----spgaDRVVFNen-nqlAgVIThtgas--gnfveÇ
d1t2ha-  (  58 )    itpgar----------trgtrRIItGeatq--edYwTgdhya---tFslI
d3agna-  (  66 )    vy-nGpYyS-srdnyvspgpDRVIYqtntGeFÇATVThtgAasydgftqÇ
                                         bbbbb       bbbb          bb 

                        
d1a2pa-  ( 110 )    r   
d1aqza-  ( 148 )    sh  
d1i0va-  ( 104 )    t   
d1t2ha-  (  93 )    dqtç
d3agna-  ( 114 )    s

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1a2pa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1a2pa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Barnase	Bacterial ribonucleases	Bacillus amyloliquefaciens [TaxId: 1390]	view
d1aqza- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1aqza- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Restrictocin	Ribotoxin	Fungus (Aspergillus restrictus) [TaxId: 5064]	view
d1i0va- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1i0va- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	RNase T1	Fungal ribonucleases	Fungus (Aspergillus oryzae) [TaxId: 5062]	view
d1t2ha- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1t2ha- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	RNase Sa	Bacterial ribonucleases	Streptomyces aureofaciens [TaxId: 1894]	view
d3agna- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3agna- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	RNase U2	Fungal ribonucleases	Ustilago sphaerogena [TaxId: 5271]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	D	V	S	G	T	V	C	L	S	A	L	P	P	E	A	T	-	-	-	-	-	-	-	-	-	-	D	T	L	N	L	I	A	S	D	G	P	-	-	-	-	F	P	Y	S	-	-	-	-	-	-	Q	D	G	V	V	F	Q	N	R	E	S	V	L	P	T	Q	S	-	-	-	-	-	-	-	-	Y	G	Y	Y	H	E	Y	T	V	I	T	P	G	A	R	-	-	-	-	-	-	-	-	-	-	T	R	G	T	R	R	I	I	T	G	E	A	T	Q	-	-	E	D	Y	W	T	G	D	H	Y	A	-	-	-	T	F	S	L	I	D	Q	T	C
C	D	I	P	Q	S	T	N	C	G	-	-	-	-	-	-	-	G	N	V	Y	S	N	D	D	I	N	T	A	I	Q	G	A	L	D	D	V	A	N	G	D	R	P	D	-	-	N	Y	P	H	Q	Y	Y	-	D	E	A	S	E	D	-	-	-	-	-	-	-	-	-	I	T	L	C	C	G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	S	G	P	W	S	E	F	P	L	V	Y	-	N	G	P	Y	Y	S	-	S	R	D	N	Y	V	S	P	G	P	D	R	V	I	Y	Q	T	N	T	G	E	F	C	A	T	V	T	H	T	G	A	A	S	Y	D	G	F	T	Q	C	S	-	-	-

Member	Chain	UniProtKB	GO term
d1a2pa_	A	P00648	GO:0003723
d1a2pa_	A	P00648	GO:0004521
d1a2pa_	A	P00648	GO:0004540
d1aqza_	A	P67876	GO:0003723
d1aqza_	A	P67876	GO:0004518
d1aqza_	A	P67876	GO:0004521
d1aqza_	A	P67876	GO:0004540
d1aqza_	A	P67876	GO:0005576
d1aqza_	A	P67876	GO:0017148
d1i0va_	A	P00651	GO:0001411
d1i0va_	A	P00651	GO:0003723
d1i0va_	A	P00651	GO:0004519
d1i0va_	A	P00651	GO:0004521
d1i0va_	A	P00651	GO:0004540
d1i0va_	A	P00651	GO:0008150
d1i0va_	A	P00651	GO:0016829
d1i0va_	A	P00651	GO:0030428
d1i0va_	A	P00651	GO:0046589
d1t2ha_	A	P05798	GO:0003723
d1t2ha_	A	P05798	GO:0004519
d1t2ha_	A	P05798	GO:0004521
d1t2ha_	A	P05798	GO:0004540
d1t2ha_	A	P05798	GO:0005576
d1t2ha_	A	P05798	GO:0016829
d1t2ha_	A	P05798	GO:0046589

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C	D	I	P	Q	S	T	N	C	G	-	-	-	-	-	-	-	G	N	V	Y	S	N	D	D	I	N	T	A	I	Q	G	A	L	D	D	V	A	N	G	D	R	P	D	-	-	N	Y	P	H	Q	Y	Y	-	D	E	A	S	E	D	-	-	-	-	-	-	-	-	-	I	T	L	C	C	G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	S	G	P	W	S	E	F	P	L	V	Y	-	N	G	P	Y	Y	S	-	S	R	D	N	Y	V	S	P	G	P	D	R	V	I	Y	Q	T	N	T	G	E	F	C	A	T	V	T	H	T	G	A	A	S	Y	D	G	F	T	Q	C	S	-	-	-

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C	D	I	P	Q	S	T	N	C	G	-	-	-	-	-	-	-	G	N	V	Y	S	N	D	D	I	N	T	A	I	Q	G	A	L	D	D	V	A	N	G	D	R	P	D	-	-	N	Y	P	H	Q	Y	Y	-	D	E	A	S	E	D	-	-	-	-	-	-	-	-	-	I	T	L	C	C	G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	S	G	P	W	S	E	F	P	L	V	Y	-	N	G	P	Y	Y	S	-	S	R	D	N	Y	V	S	P	G	P	D	R	V	I	Y	Q	T	N	T	G	E	F	C	A	T	V	T	H	T	G	A	A	S	Y	D	G	F	T	Q	C	S	-	-	-

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-	-	-	-	A	T	W	T	C	I	N	Q	Q	L	E	D	K	R	L	L	Y	S	Q	A	K	A	E	S	N	S	H	H	A	P	L	S	D	G	-	-	-	-	K	T	G	S	S	Y	P	H	W	F	T	-	N	G	Y	D	G	N	G	K	L	I	K	G	R	T	P	I	K	F	G	K	A	D	C	D	R	P	P	K	H	S	Q	N	G	M	G	K	D	D	H	Y	L	L	E	F	P	T	F	P	D	G	H	D	Y	K	F	D	S	K	K	P	K	E	N	P	G	P	A	R	V	I	Y	T	Y	P	N	K	V	F	C	G	I	V	A	H	Q	-	R	G	N	Q	G	D	L	R	L	C	S	H	-	-
-	-	-	A	C	D	Y	T	C	G	-	-	-	-	-	-	-	S	N	C	Y	S	S	S	D	V	S	T	A	Q	A	A	G	Y	-	L	H	E	D	G	E	T	V	G	S	N	S	Y	P	H	-	Y	N	-	N	-	-	Y	E	G	-	-	-	-	-	-	-	-	-	F	D	F	S	V	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	S	S	P	Y	Y	E	W	P	I	L	S	S	G	D	V	Y	S	G	-	G	-	-	-	-	-	S	P	G	A	D	R	V	V	F	N	E	N	-	N	Q	L	A	G	V	I	T	H	T	G	A	S	-	-	G	N	F	V	E	C	T	-	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	D	V	S	G	T	V	C	L	S	A	L	P	P	E	A	T	-	-	-	-	-	-	-	-	-	-	D	T	L	N	L	I	A	S	D	G	P	-	-	-	-	F	P	Y	S	-	-	-	-	-	-	Q	D	G	V	V	F	Q	N	R	E	S	V	L	P	T	Q	S	-	-	-	-	-	-	-	-	Y	G	Y	Y	H	E	Y	T	V	I	T	P	G	A	R	-	-	-	-	-	-	-	-	-	-	T	R	G	T	R	R	I	I	T	G	E	A	T	Q	-	-	E	D	Y	W	T	G	D	H	Y	A	-	-	-	T	F	S	L	I	D	Q	T	C
C	D	I	P	Q	S	T	N	C	G	-	-	-	-	-	-	-	G	N	V	Y	S	N	D	D	I	N	T	A	I	Q	G	A	L	D	D	V	A	N	G	D	R	P	D	-	-	N	Y	P	H	Q	Y	Y	-	D	E	A	S	E	D	-	-	-	-	-	-	-	-	-	I	T	L	C	C	G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	S	G	P	W	S	E	F	P	L	V	Y	-	N	G	P	Y	Y	S	-	S	R	D	N	Y	V	S	P	G	P	D	R	V	I	Y	Q	T	N	T	G	E	F	C	A	T	V	T	H	T	G	A	A	S	Y	D	G	F	T	Q	C	S	-	-	-