PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2f48a-  (   4 )    slfkqeRqkyipklPniLkkdfnnIslvygenteAiqdrqaLkefFntyg
d5xz7a1  (   1 )                                                      
                                                                      

                             60        70        80        90        100 
d2f48a-  (  55 )    lpIIsFtegesslsfskaLnIGIILSggpAPGGHNVISGVFdAIkkfnpn
d5xz7a1  (   1 )                     mkkIAVLTsggdSPGMNAAVraVVrtAiyne--
                                       bbbbbb       aaaaaaaaaaaaaa    

                             110       120       130       140       150 
d2f48a-  ( 105 )    SkLfGFkgGPlGLLendkieLteslInsyrNtGgFdIVsSgrtkIeteeh
d5xz7a1  (  32 )    ieVyGVyhGYqGLlnddIhkLelgsVgdtiqrggT-fLysarCpefkeqv
                     bbbbb    aaaa   bbbb                             

                             160       170       180       190       200 
d2f48a-  ( 155 )    YnkAlfVAkennLnAIIIIGgDdSNTNAAiLAEyFkkngeniQVIGVPKt
d5xz7a1  (  82 )    RkvAienLrkrgIeGLVVIGgdgSYrgAqrIseeck----eIqTIGIPGt
                    aaaaaaaaa     bbbbbb aaaaaaaaaaaaa        bbbbbb  

                             210       220       230       240       250 
d2f48a-  ( 205 )    IdADLrndhIeISFGFDSATkiYSelIGnlCrdAmstkkyWhFVKLMgrs
d5xz7a1  ( 128 )    IdNdIn--GTdfTIGFdTAlntIiglVdkirdtAssha-rTfIIeAmGrd
                                   aaaaaaaaaaaaaaaaaaaaaa   bbbbbb    

                             260       270       280       290       300 
d2f48a-  ( 255 )    ASHVALECALkThPNiCiVSeeVlakkktLseIIdeMVsvIlkRslngdn
d5xz7a1  ( 175 )    CGDLALwAGlsVgAetIVVpev-----kt---dIkeiAdkieqgikrgkk
                      aaaaaaaaa    bb                aaaaaaaaaaaaa    

                             310       320       330       340       350 
d2f48a-  ( 305 )    FGVVIVPEGLIefIpeVksLMleLcdifdknegeFkglniekmkeiFvak
d5xz7a1  ( 217 )    hsIVLVAegcm---------------------------------------
                      bbbbb                                           

                             360       370       380       390       400 
d2f48a-  ( 355 )    LsdymkgvYlsLplfIQfeLIkSIleRdpHGnfnVsrVpTEkLFiemIqs
d5xz7a1  ( 228 )    ---------------------------------------tAqdCqkelsq
                                                            aaaaaaaaa 

                             410       420       430       440       450 
d2f48a-  ( 405 )    rLndmkkrgeYkgsFtpvdhffGyeGrsafPSNFDSDYCySLGYNAVVLI
d5xz7a1  ( 239 )    yi-----------nvdnrvsvlghvQrggsPtgaDrvlAsrLGgyAVdLL
                                    bbbbb           aaaaaaaaaaaaaaaaa 

                             460       470       480       490       500 
d2f48a-  ( 455 )    LNgltGYMSCIknLnlkptdWiAgGVPLtmL-MNmeerygekkpVIkkal
d5xz7a1  ( 279 )    -qgetakGVGiknn-------kivatsFdeIfd----------------k
                          bbbbbb         bbbbbb                       

                             510       520       530       540       550 
d2f48a-  ( 504 )    VdlegrpfkeFvknrdkWalnnlYlypgpvqyfgsseivdeiTeTLklel
d5xz7a1  ( 309 )    Fdy--slyelAnklsi                                  
                         aaaaaaaaa                                    

                     
d2f48a-  ( 554 )    f
d5xz7a1

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2f48a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2f48a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Phosphofructokinase	Borrelia burgdorferi [TaxId: 224326]		view
d5xz7a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5xz7a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Phosphofructokinase	Staphylococcus aureus [TaxId: 1074919]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term

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									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160										170										180										190										200										210										220										230										240										250										260										270										280										290										300										310										320										330										340										350										360										370										380										390										400										410										420										430										440										450										460										470										480										490										500										510										520										530										540										550
S	L	F	K	Q	E	R	Q	K	Y	I	P	K	L	P	N	I	L	K	K	D	F	N	N	I	S	L	V	Y	G	E	N	T	E	A	I	Q	D	R	Q	A	L	K	E	F	F	N	T	Y	G	L	P	I	I	S	F	T	E	G	E	S	S	L	S	F	S	K	A	L	N	I	G	I	I	L	S	G	G	P	A	P	G	G	H	N	V	I	S	G	V	F	D	A	I	K	K	F	N	P	N	S	K	L	F	G	F	K	G	G	P	L	G	L	L	E	N	D	K	I	E	L	T	E	S	L	I	N	S	Y	R	N	T	G	G	F	D	I	V	S	S	G	R	T	K	I	E	T	E	E	H	Y	N	K	A	L	F	V	A	K	E	N	N	L	N	A	I	I	I	I	G	G	D	D	S	N	T	N	A	A	I	L	A	E	Y	F	K	K	N	G	E	N	I	Q	V	I	G	V	P	K	T	I	D	A	D	L	R	N	D	H	I	E	I	S	F	G	F	D	S	A	T	K	I	Y	S	E	L	I	G	N	L	C	R	D	A	M	S	T	K	K	Y	W	H	F	V	K	L	M	G	R	S	A	S	H	V	A	L	E	C	A	L	K	T	H	P	N	I	C	I	V	S	E	E	V	L	A	K	K	K	T	L	S	E	I	I	D	E	M	V	S	V	I	L	K	R	S	L	N	G	D	N	F	G	V	V	I	V	P	E	G	L	I	E	F	I	P	E	V	K	S	L	M	L	E	L	C	D	I	F	D	K	N	E	G	E	F	K	G	L	N	I	E	K	M	K	E	I	F	V	A	K	L	S	D	Y	M	K	G	V	Y	L	S	L	P	L	F	I	Q	F	E	L	I	K	S	I	L	E	R	D	P	H	G	N	F	N	V	S	R	V	P	T	E	K	L	F	I	E	M	I	Q	S	R	L	N	D	M	K	K	R	G	E	Y	K	G	S	F	T	P	V	D	H	F	F	G	Y	E	G	R	S	A	F	P	S	N	F	D	S	D	Y	C	Y	S	L	G	Y	N	A	V	V	L	I	L	N	G	L	T	G	Y	M	S	C	I	K	N	L	N	L	K	P	T	D	W	I	A	G	G	V	P	L	T	M	L	-	M	N	M	E	E	R	Y	G	E	K	K	P	V	I	K	K	A	L	V	D	L	E	G	R	P	F	K	E	F	V	K	N	R	D	K	W	A	L	N	N	L	Y	L	Y	P	G	P	V	Q	Y	F	G	S	S	E	I	V	D	E	I	T	E	T	L	K	L	E	L	F
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									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160										170										180										190										200										210										220										230										240										250										260										270										280										290										300										310										320										330										340										350										360										370										380										390										400										410										420										430										440										450										460										470										480										490										500										510										520										530										540										550
S	L	F	K	Q	E	R	Q	K	Y	I	P	K	L	P	N	I	L	K	K	D	F	N	N	I	S	L	V	Y	G	E	N	T	E	A	I	Q	D	R	Q	A	L	K	E	F	F	N	T	Y	G	L	P	I	I	S	F	T	E	G	E	S	S	L	S	F	S	K	A	L	N	I	G	I	I	L	S	G	G	P	A	P	G	G	H	N	V	I	S	G	V	F	D	A	I	K	K	F	N	P	N	S	K	L	F	G	F	K	G	G	P	L	G	L	L	E	N	D	K	I	E	L	T	E	S	L	I	N	S	Y	R	N	T	G	G	F	D	I	V	S	S	G	R	T	K	I	E	T	E	E	H	Y	N	K	A	L	F	V	A	K	E	N	N	L	N	A	I	I	I	I	G	G	D	D	S	N	T	N	A	A	I	L	A	E	Y	F	K	K	N	G	E	N	I	Q	V	I	G	V	P	K	T	I	D	A	D	L	R	N	D	H	I	E	I	S	F	G	F	D	S	A	T	K	I	Y	S	E	L	I	G	N	L	C	R	D	A	M	S	T	K	K	Y	W	H	F	V	K	L	M	G	R	S	A	S	H	V	A	L	E	C	A	L	K	T	H	P	N	I	C	I	V	S	E	E	V	L	A	K	K	K	T	L	S	E	I	I	D	E	M	V	S	V	I	L	K	R	S	L	N	G	D	N	F	G	V	V	I	V	P	E	G	L	I	E	F	I	P	E	V	K	S	L	M	L	E	L	C	D	I	F	D	K	N	E	G	E	F	K	G	L	N	I	E	K	M	K	E	I	F	V	A	K	L	S	D	Y	M	K	G	V	Y	L	S	L	P	L	F	I	Q	F	E	L	I	K	S	I	L	E	R	D	P	H	G	N	F	N	V	S	R	V	P	T	E	K	L	F	I	E	M	I	Q	S	R	L	N	D	M	K	K	R	G	E	Y	K	G	S	F	T	P	V	D	H	F	F	G	Y	E	G	R	S	A	F	P	S	N	F	D	S	D	Y	C	Y	S	L	G	Y	N	A	V	V	L	I	L	N	G	L	T	G	Y	M	S	C	I	K	N	L	N	L	K	P	T	D	W	I	A	G	G	V	P	L	T	M	L	-	M	N	M	E	E	R	Y	G	E	K	K	P	V	I	K	K	A	L	V	D	L	E	G	R	P	F	K	E	F	V	K	N	R	D	K	W	A	L	N	N	L	Y	L	Y	P	G	P	V	Q	Y	F	G	S	S	E	I	V	D	E	I	T	E	T	L	K	L	E	L	F
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	M	K	K	I	A	V	L	T	S	G	G	D	S	P	G	M	N	A	A	V	R	A	V	V	R	T	A	I	Y	N	E	-	-	I	E	V	Y	G	V	Y	H	G	Y	Q	G	L	L	N	D	D	I	H	K	L	E	L	G	S	V	G	D	T	I	Q	R	G	G	T	-	F	L	Y	S	A	R	C	P	E	F	K	E	Q	V	R	K	V	A	I	E	N	L	R	K	R	G	I	E	G	L	V	V	I	G	G	D	G	S	Y	R	G	A	Q	R	I	S	E	E	C	K	-	-	-	-	E	I	Q	T	I	G	I	P	G	T	I	D	N	D	I	N	-	-	G	T	D	F	T	I	G	F	D	T	A	L	N	T	I	I	G	L	V	D	K	I	R	D	T	A	S	S	H	A	-	R	T	F	I	I	E	A	M	G	R	D	C	G	D	L	A	L	W	A	G	L	S	V	G	A	E	T	I	V	V	P	E	V	-	-	-	-	-	K	T	-	-	-	D	I	K	E	I	A	D	K	I	E	Q	G	I	K	R	G	K	K	H	S	I	V	L	V	A	E	G	C	M	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	T	A	Q	D	C	Q	K	E	L	S	Q	Y	I	-	-	-	-	-	-	-	-	-	-	-	N	V	D	N	R	V	S	V	L	G	H	V	Q	R	G	G	S	P	T	G	A	D	R	V	L	A	S	R	L	G	G	Y	A	V	D	L	L	-	Q	G	E	T	A	K	G	V	G	I	K	N	N	-	-	-	-	-	-	-	K	I	V	A	T	S	F	D	E	I	F	D	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	K	F	D	Y	-	-	S	L	Y	E	L	A	N	K	L	S	I	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-