PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1llqa2  (   2 )    svahhedvyshnlppmdekemalyklyrpervtpkkrsaeLlkeprlnkg
d7mf4a1  (  12 )                                        qgrailtdryinrg
                                                          aaaa       3

                             60        70        80        90        100 
d1llqa2  (  52 )    mgFslyeRqylgLhgllppafmtqeqqayrvitkLreqpndlarYiqLdg
d7mf4a1  (  26 )    taFtmeeRqklhIlgrlppvvetleeQvarVygqVkkyekpInrYqhLvs
                    33  aaaaaa             aaaaaaaaaaaaa    aaaaaaaaaa

                             110       120       130       140       150 
d1llqa2  ( 102 )    LqdrNekLFyrVVcdhvkeLmpIVytpTVglACqnfgyiyrkpkGlyIti
d7mf4a1  (  76 )    vhstnTtlYyaTIlahleeMlpIIytpTVgeACmeyshlFfrerGvyFnr
                    aa   aaaaaaaaaa aaaaaaaa   aaaaaaaa          bbb 3

                             160       170       180       190       200 
d1llqa2  ( 152 )    ndnsvskIyqiLsnWheedVraIVVTDGerIlglgdLGAYGiGIPvgkLA
d7mf4a1  ( 126 )    lykg--qFrniMrdagyqkVeVVVITDGSrilglgdLGsnGIGISigkCs
                    33     aaaaaa        bbbbb           3333 aaaaaaaa

                             210       220       230       240       250 
d1llqa2  ( 202 )    lyvAlggvqpkwcLpVLLdVGTnnmdllndpfYiGlrhkRvrgkdYdtLL
d7mf4a1  ( 174 )    lyvAgagidprlIVPVILDVGTnnerYlqdkdYlgmrekrlgdeeFyeLL
                    aaaaaa   333bbbbbb      aaaaa              aaaaaaa

                             260       270       280       290  
d1llqa2  ( 252 )    dnFMkACtkkYgqkTlIQFEDFanpnafrLldkYqdkytMfNdd
d7mf4a1  ( 224 )    deFMeAAsaeW-pnAvIQFEdFsnnhCfdImerYqkkyrCfndd
                    aaaaaaaaaa     bbbb       aaaaaaaa     bbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1llqa2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1llqa2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Mitochondrial NAD(P)-dependent malic enzyme	Malic enzyme N-domain	Pig roundworm (Ascaris suum) [TaxId: 6253]		view
d7mf4a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d7mf4a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Trypanosoma cruzi [TaxId: 353153]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1llqa2	A	P27443	GO:0004470
d1llqa2	A	P27443	GO:0004471
d1llqa2	A	P27443	GO:0004473
d1llqa2	A	P27443	GO:0005739
d1llqa2	A	P27443	GO:0005759
d1llqa2	A	P27443	GO:0006090
d1llqa2	A	P27443	GO:0006108
d1llqa2	A	P27443	GO:0008948
d1llqa2	A	P27443	GO:0016491
d1llqa2	A	P27443	GO:0016616
d1llqa2	A	P27443	GO:0046872
d1llqa2	A	P27443	GO:0051287
d1llqa2	A	P27443	GO:0004470
d1llqa2	A	P27443	GO:0004471
d1llqa2	A	P27443	GO:0004473
d1llqa2	A	P27443	GO:0005739
d1llqa2	A	P27443	GO:0005759
d1llqa2	A	P27443	GO:0006090
d1llqa2	A	P27443	GO:0006108
d1llqa2	A	P27443	GO:0008948
d1llqa2	A	P27443	GO:0016491
d1llqa2	A	P27443	GO:0016616
d1llqa2	A	P27443	GO:0046872
d1llqa2	A	P27443	GO:0051287

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