PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1boub-  (   2 )    arVtTGITSSHipaLGaAiqtgtsdndywgpVfkgYqpIrdWIkqpgnmP
d2pw6a1  (  14 )       rpAlFLGHg------------dn-------lytwqlgtlp-----rp
                         bbbb                                         

                             60        70        80        90        100 
d1boub-  (  52 )    dVVILVYNDhasafdmniiptFAIGCaetFkpadegwgprpvpdVkGhpd
d2pw6a1  (  49 )    qa-VvVSAh---Wft----rgTgVTaly-----------dThYpapgspa
                        bbb               bbb                       aa

                             110       120       130       140       150 
d1boub-  ( 102 )    LAwhIAqsLildeFdMtimnq-MdVDhGCTVPLSMIFgepeeWpckVIPF
d2pw6a1  (  97 )    LAqrLvella--pipVtldkeawgfDhGSwgvlikyp----dadip-VQL
                    aaaaaaaaa       bbb       aaaaaaaa              bb

                             160       170       180       190       200 
d1boub-  ( 151 )    PVnVvtypPpsGkrCfaLGdsIraAVesFpedlnVHVWGTGGMSHqlq--
d2pw6a1  ( 142 )    SIDss----kpaawHFe-GrkLaaLRde------giLvASGNVVhnlrtv
                    b          aaaaa                     bbb          

                             210       220       230       240       250 
d1boub-  ( 199 )    ---gpraglinkefDlnFidkLis--dpe--elSkmphiqYlreSGseGV
d2pw6a1  ( 183 )    kwhgdspypwAtsFNeyVkanLtwqgpveqHpLVnYldhegGtlSNptpe
                               aaaaaaaa                      aaaa     

                             260       270       280       290       300 
d1boub-  ( 242 )    eLVMWLIMRgALpekVrdLYTFYHipAsnTALGAMILqpeetAgtplepr
d2pw6a1  ( 234 )    HYLPLLyVLGAwdgqepItipvegie--GSlSLSVqIg            
                        aaaaaa       bb               bbb             

                            
d1boub-  ( 292 )    kvmsghsl
d2pw6a1

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1boub- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1boub- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	LigB subunit of an aromatic-ring-opening dioxygenase LigAB	LigB-like	Pseudomonas paucimobilis [TaxId: 13689]		view
d2pw6a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2pw6a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Uncharacterized protein YgiD	LigB-like	Escherichia coli [TaxId: 562]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1boub_	B	P22635	GO:0009056
d1boub_	B	P22635	GO:0018579
d1boub_	B	P22635	GO:0051213
d1boub_	B	P22635	GO:0008198
d1boub_	B	P22635	GO:0016491
d1boub_	B	P22636	GO:0009056
d1boub_	B	P22636	GO:0018579
d1boub_	B	P22636	GO:0051213
d1boub_	B	P22636	GO:0008198
d1boub_	B	P22636	GO:0016491
d2pw6a1	A	P24197	GO:0005737
d2pw6a1	A	P24197	GO:0008198
d2pw6a1	A	P24197	GO:0008270
d2pw6a1	A	P24197	GO:0016491
d2pw6a1	A	P24197	GO:0016701
d2pw6a1	A	P24197	GO:0046872
d2pw6a1	A	P24197	GO:0050297
d2pw6a1	A	P24197	GO:0051213

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