PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1iu8a-  (   1 )     mkILLTGFepfggddkNPTmdIVeaLser-Ip---eVvgeiLpVSFkrA
d3giua-  (   2 )      hILVTGFapfdnqniNPSweAVtqLed-iIg-thtIdklkLpTSFkkV
d5z48a1  (   1 )    mptLLLTGFepfhthpdNPSaqAAqeLhgleLpggwgVhsalLpVePhaA
                       bbbbbb         aaaaaaaa           bbbbbb   aaaa

                             60        70        80        90        100 
d1iu8a-  (  46 )    rekLlkvLddvrPdITINLGLapgrthISVErvAvnmidAripDndgeqp
d3giua-  (  48 )    dniInktLasnhYdvVLAIGQaggrnaItPErvAiniDdAripDnddfqP
d5z48a1  (  51 )    gaaLtrlLseqdPgAVLLTGLaagrpqVtLErvGvGvMdFqipDnagqty
                    aaaaaaaaaa    bbbbbbb       bb  bbb  b            

                             110       120       130       140       150 
d1iu8a-  (  96 )    kdepIveggpaayfAtIpTreIVeeMkkngIpAvlsytAgtyLcNFAMYL
d3giua-  (  98 )    idqaIhldGapayfSnLPvka-TqsIinqglpGaLsnsAgtfVcNhTLYH
d5z48a1  ( 101 )    rdqpiepdApaaylAtLplraIlaaWreaeIpGdIsnsAglyVcNfVLYh
                      b        bbb         aaaaa              aaaaaaaa

                             160       170       180       190       200 
d1iu8a-  ( 146 )    TLhtsatkgyPkiAGFIHVPYTpdqvlekk----ntpsmsldlEikGVei
d3giua-  ( 148 )    LGyLqdkhyphLrFGFIHVpyIpeQvigkp----dtps-plekIvaGLtA
d5z48a1  ( 151 )    ALhwlrehggavpCGFLHVPANaaValavpadrpplpylpqseItrAVrv
                    aaaaaaa      bbbbbb                     aaaaaaaaaa

                             210       
d1iu8a-  ( 192 )    AIrvAqsalhssqlr    
d3giua-  ( 194 )    aIeaisndedlhlalgtte
d5z48a1  ( 202 )    AAeaITaqs          
                    aaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1iu8a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1iu8a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)	Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)	Pyrococcus horikoshii [TaxId: 53953]	view
d3giua- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3giua- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Staphylococcus aureus [TaxId: 93062]	view
d5z48a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5z48a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Deinococcus radiodurans [TaxId: 243230]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1iu8a_	A	O58321	GO:0005737
d1iu8a_	A	O58321	GO:0005829
d1iu8a_	A	O58321	GO:0006508
d1iu8a_	A	O58321	GO:0008234
d1iu8a_	A	O58321	GO:0016920

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