PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1c8ba-  ( 405 )    lsqsvLaveadaenpveqgvisveiteegaagkgryvlEsVgidtekeea
d1cfza-  (   1 )                                                      
                                                                      

                             60        70        80        90        100 
d1c8ba-  ( 492 )    meevFakeLnffIkslnIpddAsCLVVGLGnlsvtpdALGPkAvdnL---
d1cfza-  (   1 )                         mrILVLGVGnilltDeAIGVrIVeALeqr
                                           bbbbb      333 aaaaaaa     

                             110       120       130       140       150 
d1c8ba-  ( 539 )    liTrhlfevgfRpVsAivPgvmgmtgietsdiifgvvkvnPdFiIAIDal
d1cfza-  (  30 )    yiLpd-------yVeildG---gt----agmellgdMa-nRdHLIIADAI
                                 bbbb                aa       bbbbbbb 

                             160       170       180       190       200 
d1c8ba-  ( 597 )    a-ArsiervnaTIqIS--sGihpgg--------gkrkis----------t
d1cfza-  (  65 )    vskkn--apgtmmilrdeeVpalFtnkisphQlgLadVLsaLrftgefPk
                                bbbb                                  

                             210       220       230       240       250 
d1c8ba-  ( 645 )    vVDAVSITtiilgemgggdeeklihlaplghnlmvtpkevdmfiedMAnV
d1cfza-  ( 113 )    kLTLVGViPesle------------------phigLt----ptVeamiep
                     bbbbbb                                  aaaa  aaa

                             260       270 
d1c8ba-  ( 749 )    VAgGLnaALhenga        
d1cfza-  ( 141 )    ALeqVlaaLresgVeAiprsds
                    aaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1c8ba- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1c8ba- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Germination protease	Germination protease	Bacillus megaterium [TaxId: 1404]		view
d1cfza- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1cfza- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hydrogenase maturating endopeptidase HybD	Hydrogenase maturating endopeptidase HybD	Escherichia coli [TaxId: 562]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Show entries

Search:

Member	Chain	UniProtKB	GO term
d1c8ba_	A	P22321	GO:0006508
d1c8ba_	A	P22321	GO:0008233
d1c8ba_	A	P22321	GO:0009847
d1cfza_	A	P37182	GO:0004175
d1cfza_	A	P37182	GO:0004190
d1cfza_	A	P37182	GO:0005515
d1cfza_	A	P37182	GO:0006508
d1cfza_	A	P37182	GO:0008047
d1cfza_	A	P37182	GO:0008233
d1cfza_	A	P37182	GO:0016485

Showing 1 to 10 of 11 entries

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