PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1mgta2  (   1 )     mLSVekfrvgervvwIGVIfsgrVQgiafAfdrgtLmkrIhdlaehlgk
d1sfea2  (  12 )    laVryaladCel-grCLVAESergICaillgddd-tLiseLqqmfp----
d3l00a1  (   5 )    cemkrttldSpl-gkLeLsGCeqGLheiiflgggpepLmqAtawlnAyfh
                       bbbbb      bbbbbb    bbbbbbb     aaaaaaaa      

                             60        70        80        90   
d1mgta2  (  50 )    rgvsisldvqp-----sdyPekvfkvligeldnasflrelSfeg
d1sfea2  (  57 )    -----aAdnapadlmFqqhvreViaslnqr---dtpltlplDir
d3l00a1  (  72 )    q---------peaieefpvPalhhpvfqq

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1mgta2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1mgta2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	O6-alkylguanine-DNA alkyltransferase	Methylated DNA-protein cysteine methyltransferase domain	Pyrococcus kodakaraensis [TaxId: 311400]	view
d1sfea2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1sfea2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Ada DNA repair protein	Methylated DNA-protein cysteine methyltransferase domain	Escherichia coli [TaxId: 562]	view
d3l00a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3l00a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Human (Homo sapiens) [TaxId: 9606]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	M	L	S	V	E	K	F	R	V	G	E	R	V	V	W	I	G	V	I	F	S	G	R	V	Q	G	I	A	F	A	F	D	R	G	T	L	M	K	R	I	H	D	L	A	E	H	L	G	K	R	G	V	S	I	S	L	D	V	Q	P	-	-	-	-	-	S	D	Y	P	E	K	V	F	K	V	L	I	G	E	L	D	N	A	S	F	L	R	E	L	S	F	E	G
L	A	V	R	Y	A	L	A	D	C	E	L	-	G	R	C	L	V	A	E	S	E	R	G	I	C	A	I	L	L	G	D	D	D	-	T	L	I	S	E	L	Q	Q	M	F	P	-	-	-	-	-	-	-	-	-	A	A	D	N	A	P	A	D	L	M	F	Q	Q	H	V	R	E	V	I	A	S	L	N	Q	R	-	-	-	D	T	P	L	T	L	P	L	D	I	R
C	E	M	K	R	T	T	L	D	S	P	L	-	G	K	L	E	L	S	G	C	E	Q	G	L	H	E	I	I	F	L	G	G	G	P	E	P	L	M	Q	A	T	A	W	L	N	A	Y	F	H	Q	-	-	-	-	-	-	-	-	-	P	E	A	I	E	E	F	P	V	P	A	L	H	H	P	V	F	Q	Q	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term
d1mgta2	A	O74023	GO:0003824
d1mgta2	A	O74023	GO:0003908
d1mgta2	A	O74023	GO:0005737
d1mgta2	A	O74023	GO:0006259
d1mgta2	A	O74023	GO:0006281
d1mgta2	A	O74023	GO:0006307
d1mgta2	A	O74023	GO:0008168
d1mgta2	A	O74023	GO:0032259
d1sfea2	A	P06134	GO:0003824
d1sfea2	A	P06134	GO:0003908
d1sfea2	A	P06134	GO:0006281

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L	A	V	R	Y	A	L	A	D	C	E	L	-	G	R	C	L	V	A	E	S	E	R	G	I	C	A	I	L	L	G	D	D	D	-	T	L	I	S	E	L	Q	Q	M	F	P	-	-	-	-	-	-	-	-	-	A	A	D	N	A	P	A	D	L	M	F	Q	Q	H	V	R	E	V	I	A	S	L	N	Q	R	-	-	-	D	T	P	L	T	L	P	L	D	I	R
C	E	M	K	R	T	T	L	D	S	P	L	-	G	K	L	E	L	S	G	C	E	Q	G	L	H	E	I	I	F	L	G	G	G	P	E	P	L	M	Q	A	T	A	W	L	N	A	Y	F	H	Q	-	-	-	-	-	-	-	-	-	P	E	A	I	E	E	F	P	V	P	A	L	H	H	P	V	F	Q	Q	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

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L	A	V	R	Y	A	L	A	D	C	E	L	-	G	R	C	L	V	A	E	S	E	R	G	I	C	A	I	L	L	G	D	D	D	-	T	L	I	S	E	L	Q	Q	M	F	P	-	-	-	-	-	-	-	-	-	A	A	D	N	A	P	A	D	L	M	F	Q	Q	H	V	R	E	V	I	A	S	L	N	Q	R	-	-	-	D	T	P	L	T	L	P	L	D	I	R
C	E	M	K	R	T	T	L	D	S	P	L	-	G	K	L	E	L	S	G	C	E	Q	G	L	H	E	I	I	F	L	G	G	G	P	E	P	L	M	Q	A	T	A	W	L	N	A	Y	F	H	Q	-	-	-	-	-	-	-	-	-	P	E	A	I	E	E	F	P	V	P	A	L	H	H	P	V	F	Q	Q	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

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L	A	V	R	Y	A	L	A	D	C	E	L	-	G	R	C	L	V	A	E	S	E	R	G	I	C	A	I	L	L	G	D	D	D	-	T	L	I	S	E	L	Q	Q	M	F	P	-	-	-	-	-	-	-	-	-	A	A	D	N	A	P	A	D	L	M	F	Q	Q	H	V	R	E	V	I	A	S	L	N	Q	R	-	-	-	D	T	P	L	T	L	P	L	D	I	R
C	E	M	K	R	T	T	L	D	S	P	L	-	G	K	L	E	L	S	G	C	E	Q	G	L	H	E	I	I	F	L	G	G	G	P	E	P	L	M	Q	A	T	A	W	L	N	A	Y	F	H	Q	-	-	-	-	-	-	-	-	-	P	E	A	I	E	E	F	P	V	P	A	L	H	H	P	V	F	Q	Q	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-