PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1chma1  (   2 )    qmpktlrirngdkvrstfsaqeYanrqarLrahLaaenIdAAIFtS----
d1pv9a1  (   8 )                                 lvkfMdensIdrVFIak----
d1wl6a1  (   1 )                   seisrqefqrrRqaLVeqMqp-gSAALIFAapevt
                                                  aaa       bbbb      

                             60        70        80        90        100 
d1chma1  (  48 )    -----------yhNInyYSDFlYcsfgrpYALVVte-----ddVISISAn
d1pv9a1  (  25 )    -----------pvNVyyfSgTspl---ggGyIIVdg-----deatLyVpe
d1wl6a1  (  35 )    rsadseypyrQnsDFwyFTGfn----epeAVLVLIksddthnhsVLFNrv
                                aaaaaaa           bbbb         bbbbb  

                             110       120       130       140       150 
d1chma1  (  82 )    id------------gGqPwrrTvgtdNIVYTdwqrdNYFaAIqqAlpkAr
d1pv9a1  (  56 )    le------------yemAkeeSkl-pVvkfk------kfdeIYeiLknTe
d1wl6a1  (  81 )    rdltaeiwfgrrlGqdaApeklgVdrAla-----fseInqqLyqlLngld
                                    aaaaa     bbb           aaaaa     

                             160       170       180       190       200 
d1chma1  ( 120 )    rIGIEhdhLnlqnrdkLaarYpd------------AelvdVaaaCmrmr 
d1pv9a1  (  87 )    tLGiEgt-lsysmvenFkekSVk-------------efkkIddvikdlri
d1wl6a1  ( 126 )    VVyHaqgey-ayAdviVnsALekLrkgsrqnltaPatmidWrpvVhemrl
                    bbb       aaaaaaaaa                 bbb  aaaaaaa  

                      
d1chma1               
d1pv9a1  ( 124 )    i 
d1wl6a1  ( 175 )    fk

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1chma1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1chma1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Creatinase	Creatinase/prolidase N-terminal domain	Pseudomonas putida [TaxId: 303]	view
d1pv9a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1pv9a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Aminopeptidase P	Creatinase/prolidase N-terminal domain	Pyrococcus furiosus [TaxId: 2261]	view
d1wl6a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1wl6a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Aminopeptidase P	Creatinase/prolidase N-terminal domain	Escherichia coli [TaxId: 562]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Q	M	P	K	T	L	R	I	R	N	G	D	K	V	R	S	T	F	S	A	Q	E	Y	A	N	R	Q	A	R	L	R	A	H	L	A	A	E	N	I	D	A	A	I	F	T	S	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Y	H	N	I	N	Y	Y	S	D	F	L	Y	C	S	F	G	R	P	Y	A	L	V	V	T	E	-	-	-	-	-	D	D	V	I	S	I	S	A	N	I	D	-	-	-	-	-	-	-	-	-	-	-	-	G	G	Q	P	W	R	R	T	V	G	T	D	N	I	V	Y	T	D	W	Q	R	D	N	Y	F	A	A	I	Q	Q	A	L	P	K	A	R	R	I	G	I	E	H	D	H	L	N	L	Q	N	R	D	K	L	A	A	R	Y	P	D	-	-	-	-	-	-	-	-	-	-	-	-	A	E	L	V	D	V	A	A	A	C	M	R	M	R	-	-	-
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Member	Chain	UniProtKB	GO term
d1chma1	A	P38488	GO:0016787
d1chma1	A	P38488	GO:0016980
d1chma1	A	P38488	GO:0016787
d1chma1	A	P38488	GO:0016980
d1pv9a1	A	P81535	GO:0005737
d1pv9a1	A	P81535	GO:0006508
d1pv9a1	A	P81535	GO:0008237
d1pv9a1	A	P81535	GO:0016805
d1pv9a1	A	P81535	GO:0046872
d1pv9a1	A	P81535	GO:0102009
d1pv9a1	A	P81535	GO:0005737
d1pv9a1	A	P81535	GO:0006508
d1pv9a1	A	P81535	GO:0008237
d1pv9a1	A	P81535	GO:0016805
d1pv9a1	A	P81535	GO:0046872
d1pv9a1	A	P81535	GO:0102009
d1wl6a1	A	P15034	GO:0004177
d1wl6a1	A	P15034	GO:0005515
d1wl6a1	A	P15034	GO:0005737
d1wl6a1	A	P15034	GO:0005829
d1wl6a1	A	P15034	GO:0006508
d1wl6a1	A	P15034	GO:0008235
d1wl6a1	A	P15034	GO:0008237
d1wl6a1	A	P15034	GO:0030145
d1wl6a1	A	P15034	GO:0032991
d1wl6a1	A	P15034	GO:0042802
d1wl6a1	A	P15034	GO:0046872
d1wl6a1	A	P15034	GO:0046914
d1wl6a1	A	P15034	GO:0051289
d1wl6a1	A	P15034	GO:0070006
d1wl6a1	A	P15034	GO:0004177
d1wl6a1	A	P15034	GO:0005515
d1wl6a1	A	P15034	GO:0005737
d1wl6a1	A	P15034	GO:0005829
d1wl6a1	A	P15034	GO:0006508
d1wl6a1	A	P15034	GO:0008235
d1wl6a1	A	P15034	GO:0008237
d1wl6a1	A	P15034	GO:0030145
d1wl6a1	A	P15034	GO:0032991
d1wl6a1	A	P15034	GO:0042802
d1wl6a1	A	P15034	GO:0046872
d1wl6a1	A	P15034	GO:0046914
d1wl6a1	A	P15034	GO:0051289
d1wl6a1	A	P15034	GO:0070006

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Q	M	P	K	T	L	R	I	R	N	G	D	K	V	R	S	T	F	S	A	Q	E	Y	A	N	R	Q	A	R	L	R	A	H	L	A	A	E	N	I	D	A	A	I	F	T	S	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Y	H	N	I	N	Y	Y	S	D	F	L	Y	C	S	F	G	R	P	Y	A	L	V	V	T	E	-	-	-	-	-	D	D	V	I	S	I	S	A	N	I	D	-	-	-	-	-	-	-	-	-	-	-	-	G	G	Q	P	W	R	R	T	V	G	T	D	N	I	V	Y	T	D	W	Q	R	D	N	Y	F	A	A	I	Q	Q	A	L	P	K	A	R	R	I	G	I	E	H	D	H	L	N	L	Q	N	R	D	K	L	A	A	R	Y	P	D	-	-	-	-	-	-	-	-	-	-	-	-	A	E	L	V	D	V	A	A	A	C	M	R	M	R	-	-	-
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Q	M	P	K	T	L	R	I	R	N	G	D	K	V	R	S	T	F	S	A	Q	E	Y	A	N	R	Q	A	R	L	R	A	H	L	A	A	E	N	I	D	A	A	I	F	T	S	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Y	H	N	I	N	Y	Y	S	D	F	L	Y	C	S	F	G	R	P	Y	A	L	V	V	T	E	-	-	-	-	-	D	D	V	I	S	I	S	A	N	I	D	-	-	-	-	-	-	-	-	-	-	-	-	G	G	Q	P	W	R	R	T	V	G	T	D	N	I	V	Y	T	D	W	Q	R	D	N	Y	F	A	A	I	Q	Q	A	L	P	K	A	R	R	I	G	I	E	H	D	H	L	N	L	Q	N	R	D	K	L	A	A	R	Y	P	D	-	-	-	-	-	-	-	-	-	-	-	-	A	E	L	V	D	V	A	A	A	C	M	R	M	R	-	-	-
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