PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1a79a1  (  83 )                          erlclkylVykdLrt----rgyiVktGl
d1r0va1  (  62 )                           dfstyyfVyedLrd----rgnkVkiqg
d1r0va2  ( 215 )                          n-fdrryeVyrnLke----rgfvVktGf
d2gw6a1  (   2 )    eDawmgthpkyleMmeldiGdatqvyvAflvyldlmesksWhevncvGlp
                                            aaaaaaaaaaaaa       bbbb  

                             60        70        80        90        100 
d1a79a1  ( 107 )    kygAdfrLYerganidke-hSvyLVkVfpedssfllseltgFvrvAhsv-
d1r0va1  (  85 )    ----efLltk------------kpylPiserktirmeeiaekArn-----
d1r0va2  ( 238 )    kfgSeFrVYrkvesvddlphSeyLVdiad-sreirlidlaravrlAqnv-
d2gw6a1  (  52 )    elqliClvGteie-----geglqtvvPtpitaslshnrireilkASrklq
                         bbb               bbbbbb      aaaaaaaaaaaaa  

                             110       120       130 
d1a79a1  ( 155 )    -----rkkLlIAiVdadgdivyynmtyvkp 
d1r0va1  ( 114 )    -----fdeLrlAvVdeeseityfrvyepdmm
d1r0va2  ( 286 )    -----rKrMvfAyg-----knylcfervkv 
d2gw6a1  (  97 )    gdpdlpmsFtlAivesdstivyykltd    
                           bbbbbbb     bbbbb

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1a79a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1a79a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Tetrameric tRNA splicing endonuclease, C-terminal domain	tRNA-intron endonuclease catalytic domain-like	Methanococcus jannaschii [TaxId: 2190]	view
d1r0va1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1r0va1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Dimeric tRNA splicing endonuclease, domains 2 and 4	tRNA-intron endonuclease catalytic domain-like	Archaeoglobus fulgidus [TaxId: 2234]	view
d1r0va2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1r0va2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Dimeric tRNA splicing endonuclease, domains 2 and 4	tRNA-intron endonuclease catalytic domain-like	Archaeoglobus fulgidus [TaxId: 2234]	view
d2gw6a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2gw6a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	tRNA-splicing endonuclease subunit Sen15	tRNA-intron endonuclease catalytic domain-like	Human (Homo sapiens) [TaxId: 9606]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1a79a1	A	Q58819	GO:0000213
d1a79a1	A	Q58819	GO:0000379
d1a79a1	A	Q58819	GO:0003676
d1a79a1	A	Q58819	GO:0006388
d1a79a1	A	Q58819	GO:0008033
d1a79a1	A	Q58819	GO:0016829
d1a79a1	A	Q58819	GO:0000213
d1a79a1	A	Q58819	GO:0000379
d1a79a1	A	Q58819	GO:0003676
d1a79a1	A	Q58819	GO:0006388
d1a79a1	A	Q58819	GO:0008033
d1a79a1	A	Q58819	GO:0016829
d1r0va1	A	O29362	GO:0000213
d1r0va1	A	O29362	GO:0000379
d1r0va1	A	O29362	GO:0003676
d1r0va1	A	O29362	GO:0006388
d1r0va1	A	O29362	GO:0008033
d1r0va1	A	O29362	GO:0016829
d1r0va1	A	O29362	GO:0000213
d1r0va1	A	O29362	GO:0000379
d1r0va1	A	O29362	GO:0003676
d1r0va1	A	O29362	GO:0006388
d1r0va1	A	O29362	GO:0008033
d1r0va1	A	O29362	GO:0016829
d1r0va1	A	O29362	GO:0000213
d1r0va1	A	O29362	GO:0000379
d1r0va1	A	O29362	GO:0003676
d1r0va1	A	O29362	GO:0006388
d1r0va1	A	O29362	GO:0008033
d1r0va1	A	O29362	GO:0016829
d1r0va2	A	O29362	GO:0000213
d1r0va2	A	O29362	GO:0000379
d1r0va2	A	O29362	GO:0003676
d1r0va2	A	O29362	GO:0006388
d1r0va2	A	O29362	GO:0008033
d1r0va2	A	O29362	GO:0016829
d1r0va2	A	O29362	GO:0000213
d1r0va2	A	O29362	GO:0000379
d1r0va2	A	O29362	GO:0003676
d1r0va2	A	O29362	GO:0006388
d1r0va2	A	O29362	GO:0008033
d1r0va2	A	O29362	GO:0016829
d1r0va2	A	O29362	GO:0000213
d1r0va2	A	O29362	GO:0000379
d1r0va2	A	O29362	GO:0003676
d1r0va2	A	O29362	GO:0006388
d1r0va2	A	O29362	GO:0008033
d1r0va2	A	O29362	GO:0016829
d2gw6a1	A	Q8WW01	GO:0003676
d2gw6a1	A	Q8WW01	GO:0006388

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E	D	A	W	M	G	T	H	P	K	Y	L	E	M	M	E	L	D	I	G	D	A	T	Q	V	Y	V	A	F	L	V	Y	L	D	L	M	E	S	K	S	W	H	E	V	N	C	V	G	L	P	E	L	Q	L	I	C	L	V	G	T	E	I	E	-	-	-	-	-	G	E	G	L	Q	T	V	V	P	T	P	I	T	A	S	L	S	H	N	R	I	R	E	I	L	K	A	S	R	K	L	Q	G	D	P	D	L	P	M	S	F	T	L	A	I	V	E	S	D	S	T	I	V	Y	Y	K	L	T	D	-	-	-	-

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