PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1nbwb-  (   5 )                  ppGVrLfyDprgh-----------hagAineLçwGL
d1uc4b-  (  46 )    gfLtevgeArqgtqqdeVIIAVGPAFGlaqtvNIvgipHksILreViaGI
d2d0ob1  (   5 )                hsapAIAIAVid-------------gCdglWreVllGI
                                     bbbbb                     aaaaaaa

                             60        70        80        90        100 
d1nbwb-  (  30 )    eeqgvpÇqtitydgGgdaaaLGalAArsSplrVGIGLSasGeIALthAql
d1uc4b-  (  96 )    eeegIkArVIRCfksSdvafVAveGNrlSGSgISIGIqSkGtTVIHqqgl
d2d0ob1  (  30 )    eeegipfrlqhhp-ageVvdsAwqAArsSpllVGIACdr-hmLVVHyknl
                    a     bbbbb      aaaaaaaaaa     bbbbb     bbbbb   

                             110       120       130       140       150 
d1nbwb-  (  80 )    padaplatg-hvt-dsddqLrtLGaNAGqlvkvlplsern          
d1uc4b-  ( 146 )    pplsnlelfpqAplLtletYrqIGkNAAryAkrespqpvptlndqmarpk
d2d0ob1  (  78 )    pasaplftL-mhh-qdsqahrnTGnnAArlvkgipfr             
                          bbb       aaaaaaaaaaaaaaa                   

                             160       170      
d1nbwb-                                         
d1uc4b-  ( 196 )    yqaksailhikEtkyvvtgknpqeLrva
d2d0ob1

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1nbwb- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1nbwb- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Glycerol dehydratase reactivase, beta subunit	Dehydratase-reactivating factor beta subunit	Klebsiella pneumoniae [TaxId: 573]	view
d1uc4b- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1uc4b- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Diol dehydratase, beta subunit	Diol dehydratase, beta subunit	Klebsiella oxytoca [TaxId: 571]	view
d2d0ob1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2d0ob1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Diol dehydratase-reactivating factor small subunit DdrB	Dehydratase-reactivating factor beta subunit	Klebsiella oxytoca [TaxId: 571]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1nbwb_	B	Q59474	GO:0046872
d1nbwb_	B	Q48423	GO:0046872
d1nbwb_	B	Q59474	GO:0046872
d1nbwb_	B	Q48423	GO:0046872
d1uc4b_	B	Q59470	GO:0016829
d1uc4b_	B	Q59470	GO:0050215
d1uc4b_	B	Q59471	GO:0016829
d1uc4b_	B	Q59471	GO:0050215
d1uc4b_	B	Q59472	GO:0016829
d1uc4b_	B	Q59472	GO:0050215
d1uc4b_	B	Q59470	GO:0016829
d1uc4b_	B	Q59470	GO:0050215
d1uc4b_	B	Q59471	GO:0016829
d1uc4b_	B	Q59471	GO:0050215
d1uc4b_	B	Q59472	GO:0016829
d1uc4b_	B	Q59472	GO:0050215
d1uc4b_	B	Q59470	GO:0016829
d1uc4b_	B	Q59470	GO:0050215
d1uc4b_	B	Q59471	GO:0016829
d1uc4b_	B	Q59471	GO:0050215
d1uc4b_	B	Q59472	GO:0016829
d1uc4b_	B	Q59472	GO:0050215
d2d0ob1	B	O68195	GO:0005515
d2d0ob1	B	O68195	GO:0016787
d2d0ob1	B	O68195	GO:0046872
d2d0ob1	B	O68196	GO:0005515
d2d0ob1	B	O68196	GO:0016787
d2d0ob1	B	O68196	GO:0046872
d2d0ob1	B	O68195	GO:0005515
d2d0ob1	B	O68195	GO:0016787
d2d0ob1	B	O68195	GO:0046872
d2d0ob1	B	O68196	GO:0005515
d2d0ob1	B	O68196	GO:0016787
d2d0ob1	B	O68196	GO:0046872

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