Superfamily : 52733 [ Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) ]
Class : Alpha and beta proteins (a/b)
Fold : Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
# of Members : 4
Superposed Structure
solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x
 
                             10        20        30        40        50  
d1wx1a-  (   1 )                 mdpevfaqArlrMdqLtkppralgyleeVAlrLAALq
d4hdra-  (   1 )    mslLqaTvakImrPdtvikdqVktkLagvlqsagslgrledmVeqYAGIT
d4hdrb-  (   1 )      mleeliaaIkpldsiAmeqCqrrVdnLtkplnslhsfEhIAckLAGIs
d4kqia-  (   3 )      tlhallrdIpapdaeAmarAqqhIdgLlkppgslgrletLAvqLAGMp
                       aaaa        aaaaaaaaaaaa          aaaaaaaaaaaaa

                             60        70        80        90        100 
d1wx1a-  (  38 )    -grvkPeLgrGAVVVAAADHgVvaegVsaypqevTrqmVlnFLr-ggAaI
d4hdra-  (  51 )    -gelnPalPkPCMVVASADHGVArrvvsaypietTihmTanYlisqgasA
d4hdrb-  (  49 )    -gnprPraLekSIIIMAAdngva------qm--tTaarLtgFcq-gqapI
d4kqia-  (  51 )    gLngtPqVgekAVLVMCADHgVwdegVavspkivTaiqAanMtr-gtTgV
                              bbbbbbbb  33333        aaaaaaaaaa     aa

                             110       120       130       140       150 
d1wx1a-  (  86 )    nqfAlaAdCavyVLDVGVvgeLpdhpgLlkrkVrpGTanLAqgpAMtpee
d4hdra-  ( 100 )    nafAnfCgAdmVVVDMGVagdLsyVpgLwhrkIayGTqDFtegpAMtreq
d4hdrb-  (  95 )    qvfAahVqArliMVDIGVaadlphspaVcrkklaygSrnstegpAMtrqq
d4kqia-  ( 100 )    cvlAaqAgAkvhVIDVGIdaepip--gVvnmrvargCgnIAvgpAMsrlq
                    aaaaaa   bbbbbbbb           bb                 aaa

                             160       170       180       190       200 
d1wx1a-  ( 136 )    AerALlAGreAArrAiaegAtLLAAGDmGigNtTAAAALTAAllglppea
d4hdra-  ( 150 )    AiqAVeTGIdIVndrvkhgNrCFCLGEmGigNtTSSATIVGaFtglapek
d4hdrb-  ( 145 )    AiqAIeVGVriAqaeiargCqVIGLGeMGlgGlaaAMAIVacchgqpLp-
d4kqia-  ( 148 )    AeaLLleVSryTçdlaq-gVtLFGVGElGmANtTPAAAMVsvFTgsdAk-
                    aaaaaaaaaaaaaaaaa    bbbbbbb   aaaaaaaaaaaaa      

                             210       220       230       240       250 
d1wx1a-  ( 186 )    VVg-g----eeglrrkrqAVarAlarlhp-gmgplevAAeVGGLELVAIA
d4hdra-  ( 200 )    VTgrg----tgrlktkmeIVgrAlavNkPnpqdGLdVLakVGGFELGALA
d4hdrb-  ( 194 )    gla----------greaelVntAiavNrPnaadpldILtkVGgLAIAGLV
d4kqia-  ( 198 )    VVgiganLppsridnKVdVVrrAiaiNqPnprdGidVLSkVGGFDLVGMT
                                 aaaaaaaaaaaaaa      aaaaaaaa  aaaaaaa

                             260       270       280       290       300 
d1wx1a-  ( 235 )    GIYLeGyeaglPLVLDgFpVTAGALLAwkmapgLrdhLFAGHlSrepGHr
d4hdra-  ( 250 )    GVILGSAAnrCAVVIDgLNTTAAALIAnvihplSkeYMFASHlsgepAHs
d4hdrb-  ( 234 )    GVILGAAAgrAAVVLDgLaTSTAALIAinlvpdVkpYLIGSHfAaepAHe
d4kqia-  ( 248 )    GVMLGAArçGLPVLLDgFlSYSAAlAAcqIapaVrpYLIpSHfSaekGAr
                    aaaaaaaa    bb   aaaaaaaaaaaaa 333333bb         aa

                             310       320       330       340       350 
d1wx1a-  ( 285 )    hQLeaLgLrpLldldlalgEGTGAVlAMplLraAAriLh-matfqeagvs
d4hdra-  ( 300 )    iAlrqLqleAclelgvrlGEGiGASmVVdmLyvAIklLn-n         
d4hdrb-  ( 284 )    tALalLdVpAylqlkmnlgeGTGAAlGMsvInaTlhMLndmktfgeaeva
d4kqia-  ( 298 )    iALahLsMePylhmamrlgaGSGAAlAMpiVeaAcamfhnmgela     
                    aaaaa                aaaaaaaaaaaaaaaaa            

                      
d1wx1a-  ( 334 )    rg
d4hdra-               
d4hdrb-  ( 334 )    va
d4kqia-
 

 

Domain IDNameFamilySourceDomainSTRING-DB
automated matchesNicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)Thermus thermophilus HB8 [TaxId: 300852]view
automated matchesautomated matchesSporomusa ovata [TaxId: 2378]view
automated matchesautomated matchesSporomusa ovata [TaxId: 2378]view
automated matchesNicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)Salmonella enterica [TaxId: 99287]view

 

No outliers

FeatureDownload
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

 

10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350
- - - - - - - - - - - - - M D P E V F A Q A R L R M D Q L T K P P R A L G Y L E E V A L R L A A L Q - G R V K P E L G R G A V V V A A A D H G V V A E G V S A Y P Q E V T R Q M V L N F L R - G G A A I N Q F A L A A D C A V Y V L D V G V V G E L P D H P G L L K R K V R P G T A N L A Q G P A M T P E E A E R A L L A G R E A A R R A I A E G A T L L A A G D M G I G N T T A A A A L T A A L L G L P P E A V V G - G - - - - E E G L R R K R Q A V A R A L A R L H P - G M G P L E V A A E V G G L E L V A I A G I Y L E G Y E A G L P L V L D G F P V T A G A L L A W K M A P G L R D H L F A G H L S R E P G H R H Q L E A L G L R P L L D L D L A L G E G T G A V L A M P L L R A A A R I L H - M A T F Q E A G V S R G
M S L L Q A T V A K I M R P D T V I K D Q V K T K L A G V L Q S A G S L G R L E D M V E Q Y A G I T - G E L N P A L P K P C M V V A S A D H G V A R R V V S A Y P I E T T I H M T A N Y L I S Q G A S A N A F A N F C G A D M V V V D M G V A G D L S Y V P G L W H R K I A Y G T Q D F T E G P A M T R E Q A I Q A V E T G I D I V N D R V K H G N R C F C L G E M G I G N T T S S A T I V G A F T G L A P E K V T G R G - - - - T G R L K T K M E I V G R A L A V N K P N P Q D G L D V L A K V G G F E L G A L A G V I L G S A A N R C A V V I D G L N T T A A A L I A N V I H P L S K E Y M F A S H L S G E P A H S I A L R Q L Q L E A C L E L G V R L G E G I G A S M V V D M L Y V A I K L L N - N - - - - - - - - - - -
- - M L E E L I A A I K P L D S I A M E Q C Q R R V D N L T K P L N S L H S F E H I A C K L A G I S - G N P R P R A L E K S I I I M A A D N G V A - - - - - - Q M - - T T A A R L T G F C Q - G Q A P I Q V F A A H V Q A R L I M V D I G V A A D L P H S P A V C R K K L A Y G S R N S T E G P A M T R Q Q A I Q A I E V G V R I A Q A E I A R G C Q V I G L G E M G L G G L A A A M A I V A C C H G Q P L P - G L A - - - - - - - - - - G R E A E L V N T A I A V N R P N A A D P L D I L T K V G G L A I A G L V G V I L G A A A G R A A V V L D G L A T S T A A L I A I N L V P D V K P Y L I G S H F A A E P A H E T A L A L L D V P A Y L Q L K M N L G E G T G A A L G M S V I N A T L H M L N D M K T F G E A E V A V A
- - T L H A L L R D I P A P D A E A M A R A Q Q H I D G L L K P P G S L G R L E T L A V Q L A G M P G L N G T P Q V G E K A V L V M C A D H G V W D E G V A V S P K I V T A I Q A A N M T R - G T T G V C V L A A Q A G A K V H V I D V G I D A E P I P - - G V V N M R V A R G C G N I A V G P A M S R L Q A E A L L L E V S R Y T C D L A Q - G V T L F G V G E L G M A N T T P A A A M V S V F T G S D A K - V V G I G A N L P P S R I D N K V D V V R R A I A I N Q P N P R D G I D V L S K V G G F D L V G M T G V M L G A A R C G L P V L L D G F L S Y S A A L A A C Q I A P A V R P Y L I P S H F S A E K G A R I A L A H L S M E P Y L H M A M R L G A G S G A A L A M P I V E A A C A M F H N M G E L A - - - - - - -

 

 

 

 

 

Member Chain UniProtKB GO term
 
Contact: Prof. R. Sowdhamini - mini@ncbs.res.in