PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1nrza-  (   2 )     MqItlARIDdrLIhgqvTtvWSkvAnAqrIIICnddvfndevrrtlLrq
d3eyea-  (   5 )      nillTRIDnrLVhgqvGvtWTstigAnlLVVVddvVAnddiqqklmgi
d3lfja1  (   1 )    mWkIvfARIDdrLIhgqvMtrWMkgfpA-sIvIIDdeLavdefmkniytm
d3p3va-  (   2 )    tqPnIiTRVDerlihg-qGqlwVf-lnCnTVIVAndavsedkiqqsl-kt
d5t5da-  (   2 )      sieFVRIdd-LVhg--VttWlkkydIeqVIIVndrIsed-trqsiLki
                       bbbbbb         aaaaa      bbbbb aaaaa   aaaaaaa

                             60        70        80        90        100 
d1nrza-  (  51 )    aapp-gmkVnVvslekAvavyhnpqyqdetVFYLFtnPhdVltMvrqgVq
d3eyea-  (  53 )    tAetygfgirfftiekTinvig-kaaphqkIFLICrtPqtVrkLVeggid
d3lfja1  (  51 )    aAPp-g--vVVfgVdaAl-ews-qtsveekVFLLFknIdTCkrVMdggLp
d3p3va-  (  52 )    vIps-siairffsIqkVidiIh-kaspaqsIFIVVkdLqdAklLveggVp
d5t5da-  (  50 )    sAp--gLkIvffsv-kFvevlnv----pirTMLIYtnPkdVydSiegnl-
                           bbbbb aaaaaaa          bbbbb  aaaaaaaaa    

                             110       120       130       140       150 
d1nrza-  ( 100 )    IatLNIGgMawrpgkkqltkaVSLdpqDiqAFreLdk-lgVkLdLrvvas
d3eyea-  ( 102 )    LkdVNVGNMhfsegkkqisskVyVddqDltDLrfIkq-rgVnVFIqdvpg
d3lfja1  ( 100 )    IttLNIGgVaktpqrkgIs-sVSLsedeV-tLleL-tkynVdVyLqmipd
d3p3va-  ( 100 )    IteInIGNIhktddkvaitqfISLgetdksAIrcLAhdhhVvFnTt-tpa
d5t5da-  (  98 )    leyLNVGms-----------ggalg-edkyyFI------gTrveiqmvpd
                      bbbb         bb     bb   aaaa          bbbb     

                             160     
d1nrza-  ( 149 )    dp-svnIldkInetafc
d3eyea-  ( 151 )    dq-keqIp         
d3lfja1  ( 150 )    se-kihlttVvekyfp 
d3p3va-  ( 150 )    gasdvdIldyi      
d5t5da-  ( 149 )    ---vtmLekfl

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1nrza- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1nrza- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Sorbose permease subunit IIb , EIIb-sor	PTS IIb component	Klebsiella pneumoniae [TaxId: 573]	view
d3eyea- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3eyea- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Escherichia coli O157:H7 [TaxId: 83334]	view
d3lfja1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3lfja1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Thermoanaerobacter tengcongensis [TaxId: 273068]	view
d3p3va- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3p3va- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Streptococcus pyogenes [TaxId: 301447]	view
d5t5da- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5t5da- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Streptococcus pneumoniae [TaxId: 170187]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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M	W	K	I	V	F	A	R	I	D	D	R	L	I	H	G	Q	V	M	T	R	W	M	K	G	F	P	A	-	S	I	V	I	I	D	D	E	L	A	V	D	E	F	M	K	N	I	Y	T	M	A	A	P	P	-	G	-	-	V	V	V	F	G	V	D	A	A	L	-	E	W	S	-	Q	T	S	V	E	E	K	V	F	L	L	F	K	N	I	D	T	C	K	R	V	M	D	G	G	L	P	I	T	T	L	N	I	G	G	V	A	K	T	P	Q	R	K	G	I	S	-	S	V	S	L	S	E	D	E	V	-	T	L	L	E	L	-	T	K	Y	N	V	D	V	Y	L	Q	M	I	P	D	S	E	-	K	I	H	L	T	T	V	V	E	K	Y	F	P	-
T	Q	P	N	I	I	T	R	V	D	E	R	L	I	H	G	-	Q	G	Q	L	W	V	F	-	L	N	C	N	T	V	I	V	A	N	D	A	V	S	E	D	K	I	Q	Q	S	L	-	K	T	V	I	P	S	-	S	I	A	I	R	F	F	S	I	Q	K	V	I	D	I	I	H	-	K	A	S	P	A	Q	S	I	F	I	V	V	K	D	L	Q	D	A	K	L	L	V	E	G	G	V	P	I	T	E	I	N	I	G	N	I	H	K	T	D	D	K	V	A	I	T	Q	F	I	S	L	G	E	T	D	K	S	A	I	R	C	L	A	H	D	H	H	V	V	F	N	T	T	-	T	P	A	G	A	S	D	V	D	I	L	D	Y	I	-	-	-	-	-	-
-	-	S	I	E	F	V	R	I	D	D	-	L	V	H	G	-	-	V	T	T	W	L	K	K	Y	D	I	E	Q	V	I	I	V	N	D	R	I	S	E	D	-	T	R	Q	S	I	L	K	I	S	A	P	-	-	G	L	K	I	V	F	F	S	V	-	K	F	V	E	V	L	N	V	-	-	-	-	P	I	R	T	M	L	I	Y	T	N	P	K	D	V	Y	D	S	I	E	G	N	L	-	L	E	Y	L	N	V	G	M	S	-	-	-	-	-	-	-	-	-	-	-	G	G	A	L	G	-	E	D	K	Y	Y	F	I	-	-	-	-	-	-	G	T	R	V	E	I	Q	M	V	P	D	-	-	-	V	T	M	L	E	K	F	L	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term
d1nrza_	A	P37081	GO:0005737
d1nrza_	A	P37081	GO:0008982
d1nrza_	A	P37081	GO:0009401
d1nrza_	A	P37081	GO:0016301
d1nrza_	A	P37081	GO:0016310
d1nrza_	A	P37081	GO:0022871
d1nrza_	A	P37081	GO:1904659

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-	-	N	I	L	L	T	R	I	D	N	R	L	V	H	G	Q	V	G	V	T	W	T	S	T	I	G	A	N	L	L	V	V	V	D	D	V	V	A	N	D	D	I	Q	Q	K	L	M	G	I	T	A	E	T	Y	G	F	G	I	R	F	F	T	I	E	K	T	I	N	V	I	G	-	K	A	A	P	H	Q	K	I	F	L	I	C	R	T	P	Q	T	V	R	K	L	V	E	G	G	I	D	L	K	D	V	N	V	G	N	M	H	F	S	E	G	K	K	Q	I	S	S	K	V	Y	V	D	D	Q	D	L	T	D	L	R	F	I	K	Q	-	R	G	V	N	V	F	I	Q	D	V	P	G	D	Q	-	K	E	Q	I	P	-	-	-	-	-	-	-	-	-
M	W	K	I	V	F	A	R	I	D	D	R	L	I	H	G	Q	V	M	T	R	W	M	K	G	F	P	A	-	S	I	V	I	I	D	D	E	L	A	V	D	E	F	M	K	N	I	Y	T	M	A	A	P	P	-	G	-	-	V	V	V	F	G	V	D	A	A	L	-	E	W	S	-	Q	T	S	V	E	E	K	V	F	L	L	F	K	N	I	D	T	C	K	R	V	M	D	G	G	L	P	I	T	T	L	N	I	G	G	V	A	K	T	P	Q	R	K	G	I	S	-	S	V	S	L	S	E	D	E	V	-	T	L	L	E	L	-	T	K	Y	N	V	D	V	Y	L	Q	M	I	P	D	S	E	-	K	I	H	L	T	T	V	V	E	K	Y	F	P	-
T	Q	P	N	I	I	T	R	V	D	E	R	L	I	H	G	-	Q	G	Q	L	W	V	F	-	L	N	C	N	T	V	I	V	A	N	D	A	V	S	E	D	K	I	Q	Q	S	L	-	K	T	V	I	P	S	-	S	I	A	I	R	F	F	S	I	Q	K	V	I	D	I	I	H	-	K	A	S	P	A	Q	S	I	F	I	V	V	K	D	L	Q	D	A	K	L	L	V	E	G	G	V	P	I	T	E	I	N	I	G	N	I	H	K	T	D	D	K	V	A	I	T	Q	F	I	S	L	G	E	T	D	K	S	A	I	R	C	L	A	H	D	H	H	V	V	F	N	T	T	-	T	P	A	G	A	S	D	V	D	I	L	D	Y	I	-	-	-	-	-	-
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M	W	K	I	V	F	A	R	I	D	D	R	L	I	H	G	Q	V	M	T	R	W	M	K	G	F	P	A	-	S	I	V	I	I	D	D	E	L	A	V	D	E	F	M	K	N	I	Y	T	M	A	A	P	P	-	G	-	-	V	V	V	F	G	V	D	A	A	L	-	E	W	S	-	Q	T	S	V	E	E	K	V	F	L	L	F	K	N	I	D	T	C	K	R	V	M	D	G	G	L	P	I	T	T	L	N	I	G	G	V	A	K	T	P	Q	R	K	G	I	S	-	S	V	S	L	S	E	D	E	V	-	T	L	L	E	L	-	T	K	Y	N	V	D	V	Y	L	Q	M	I	P	D	S	E	-	K	I	H	L	T	T	V	V	E	K	Y	F	P	-
T	Q	P	N	I	I	T	R	V	D	E	R	L	I	H	G	-	Q	G	Q	L	W	V	F	-	L	N	C	N	T	V	I	V	A	N	D	A	V	S	E	D	K	I	Q	Q	S	L	-	K	T	V	I	P	S	-	S	I	A	I	R	F	F	S	I	Q	K	V	I	D	I	I	H	-	K	A	S	P	A	Q	S	I	F	I	V	V	K	D	L	Q	D	A	K	L	L	V	E	G	G	V	P	I	T	E	I	N	I	G	N	I	H	K	T	D	D	K	V	A	I	T	Q	F	I	S	L	G	E	T	D	K	S	A	I	R	C	L	A	H	D	H	H	V	V	F	N	T	T	-	T	P	A	G	A	S	D	V	D	I	L	D	Y	I	-	-	-	-	-	-
-	-	S	I	E	F	V	R	I	D	D	-	L	V	H	G	-	-	V	T	T	W	L	K	K	Y	D	I	E	Q	V	I	I	V	N	D	R	I	S	E	D	-	T	R	Q	S	I	L	K	I	S	A	P	-	-	G	L	K	I	V	F	F	S	V	-	K	F	V	E	V	L	N	V	-	-	-	-	P	I	R	T	M	L	I	Y	T	N	P	K	D	V	Y	D	S	I	E	G	N	L	-	L	E	Y	L	N	V	G	M	S	-	-	-	-	-	-	-	-	-	-	-	G	G	A	L	G	-	E	D	K	Y	Y	F	I	-	-	-	-	-	-	G	T	R	V	E	I	Q	M	V	P	D	-	-	-	V	T	M	L	E	K	F	L	-	-	-	-	-	-

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-	M	Q	I	T	L	A	R	I	D	D	R	L	I	H	G	Q	V	T	T	V	W	S	K	V	A	N	A	Q	R	I	I	I	C	N	D	D	V	F	N	D	E	V	R	R	T	L	L	R	Q	A	A	P	P	-	G	M	K	V	N	V	V	S	L	E	K	A	V	A	V	Y	H	N	P	Q	Y	Q	D	E	T	V	F	Y	L	F	T	N	P	H	D	V	L	T	M	V	R	Q	G	V	Q	I	A	T	L	N	I	G	G	M	A	W	R	P	G	K	K	Q	L	T	K	A	V	S	L	D	P	Q	D	I	Q	A	F	R	E	L	D	K	-	L	G	V	K	L	D	L	R	V	V	A	S	D	P	-	S	V	N	I	L	D	K	I	N	E	T	A	F	C
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M	W	K	I	V	F	A	R	I	D	D	R	L	I	H	G	Q	V	M	T	R	W	M	K	G	F	P	A	-	S	I	V	I	I	D	D	E	L	A	V	D	E	F	M	K	N	I	Y	T	M	A	A	P	P	-	G	-	-	V	V	V	F	G	V	D	A	A	L	-	E	W	S	-	Q	T	S	V	E	E	K	V	F	L	L	F	K	N	I	D	T	C	K	R	V	M	D	G	G	L	P	I	T	T	L	N	I	G	G	V	A	K	T	P	Q	R	K	G	I	S	-	S	V	S	L	S	E	D	E	V	-	T	L	L	E	L	-	T	K	Y	N	V	D	V	Y	L	Q	M	I	P	D	S	E	-	K	I	H	L	T	T	V	V	E	K	Y	F	P	-
T	Q	P	N	I	I	T	R	V	D	E	R	L	I	H	G	-	Q	G	Q	L	W	V	F	-	L	N	C	N	T	V	I	V	A	N	D	A	V	S	E	D	K	I	Q	Q	S	L	-	K	T	V	I	P	S	-	S	I	A	I	R	F	F	S	I	Q	K	V	I	D	I	I	H	-	K	A	S	P	A	Q	S	I	F	I	V	V	K	D	L	Q	D	A	K	L	L	V	E	G	G	V	P	I	T	E	I	N	I	G	N	I	H	K	T	D	D	K	V	A	I	T	Q	F	I	S	L	G	E	T	D	K	S	A	I	R	C	L	A	H	D	H	H	V	V	F	N	T	T	-	T	P	A	G	A	S	D	V	D	I	L	D	Y	I	-	-	-	-	-	-
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