PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d3cb2a1  (   3 )     reiITLQLgqcGNqIGfeFWkqLCaeHgIspeAivfagtdrkdVFFyqa
d3ryca1  (   1 )    mrECISIHVgqaGVqIGnaCWelYCleHgIqpdGqmps-ddsfnTFFset
d6rvqa1  (  12 )     atlKviGvGggGnnavnrMidh-----gMn-------------------
                       bbbbbbaaaaaaaaaaaaaa                           

                             60        70        80        90        100 
d3cb2a1  (  56 )    ddehyiPrAVLLDLeprVIhsIlnspya-LYnpeNiylsg-------ggA
d3ryca1  (  57 )    gagkHvPrAVFVDLeptvIdevrtgtyrqLFhpeQLiTgk-------edA
d6rvqa1  (  37 )    -----nveFiAintdgqaln---------lSkAe-skiqigekltrglgA
                            bbbbb   aaaa               bbb            

                             110       120       130       140       150 
d3cb2a1  ( 101 )    gnnwasGfs-qG-eihedIFdiIdreAdgSdsLeGFvLCHsIagGtGSGL
d3ryca1  ( 100 )    annYarGhytiGkeiIdlVLdrIrkladqCtglqGFLVFHsfGgGTGSGF
d6rvqa1  (  72 )    ganpeiGkk-AAeesreqiedaiq-------gAdMvFvtSgMGgGtGtgA
                       aaaaa   a   aaaaaaaa           bbbbbbb    aaaaa

                             160       170       180       190       200 
d3cb2a1  ( 150 )    GSyLLerLndryp-klvqTYSVfpnqdmsdvvvqpyNsllTlkrLtqnAd
d3ryca1  ( 150 )    TSlLMerLsvdygkksKlEFSIypApqvstavvepyNsilTthtTlehsd
d6rvqa1  ( 114 )    ApvvAkiAkem--gAltvGvvtrPfsfeg--rkrqtqAaaGveaMkaavd
                    aaaaaaaaaa     bbbbbbbb          aaaaaaaaaaaa     

                             210       220       230       240       250 
d3cb2a1  ( 201 )    clvvLdntaln-iAtdrlhiqnPsfsqIn-lVstiMSasTttlRyp    
d3ryca1  ( 200 )    cafmvdneaiydiCrrnldierPtytnLnrlISqiVssiTaslRfd    
d6rvqa1  ( 160 )    tlivipndrlldivd-----kstpmmeAfkeadnvlrqgvqgisdliavs
                    bbbbbb                  aaaa   aaaaaaaa           

                        
d3cb2a1                 
d3ryca1                 
d6rvqa1  ( 205 )    gevn

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d3cb2a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3cb2a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Human (Homo sapiens) [TaxId: 9606]	view
d3ryca1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3ryca1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Tubulin, GTPase domain	Sheep (Ovis aries) [TaxId: 9940]	view
d6rvqa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6rvqa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Cell-division protein FtsZ	Tubulin, GTPase domain	Staphylococcus aureus [TaxId: 1280]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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M	R	E	C	I	S	I	H	V	G	Q	A	G	V	Q	I	G	N	A	C	W	E	L	Y	C	L	E	H	G	I	Q	P	D	G	Q	M	P	S	-	D	D	S	F	N	T	F	F	S	E	T	G	A	G	K	H	V	P	R	A	V	F	V	D	L	E	P	T	V	I	D	E	V	R	T	G	T	Y	R	Q	L	F	H	P	E	Q	L	I	T	G	K	-	-	-	-	-	-	-	E	D	A	A	N	N	Y	A	R	G	H	Y	T	I	G	K	E	I	I	D	L	V	L	D	R	I	R	K	L	A	D	Q	C	T	G	L	Q	G	F	L	V	F	H	S	F	G	G	G	T	G	S	G	F	T	S	L	L	M	E	R	L	S	V	D	Y	G	K	K	S	K	L	E	F	S	I	Y	P	A	P	Q	V	S	T	A	V	V	E	P	Y	N	S	I	L	T	T	H	T	T	L	E	H	S	D	C	A	F	M	V	D	N	E	A	I	Y	D	I	C	R	R	N	L	D	I	E	R	P	T	Y	T	N	L	N	R	L	I	S	Q	I	V	S	S	I	T	A	S	L	R	F	D	-	-	-	-	-	-	-	-
-	A	T	L	K	V	I	G	V	G	G	G	G	N	N	A	V	N	R	M	I	D	H	-	-	-	-	-	G	M	N	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	N	V	E	F	I	A	I	N	T	D	G	Q	A	L	N	-	-	-	-	-	-	-	-	-	L	S	K	A	E	-	S	K	I	Q	I	G	E	K	L	T	R	G	L	G	A	G	A	N	P	E	I	G	K	K	-	A	A	E	E	S	R	E	Q	I	E	D	A	I	Q	-	-	-	-	-	-	-	G	A	D	M	V	F	V	T	S	G	M	G	G	G	T	G	T	G	A	A	P	V	V	A	K	I	A	K	E	M	-	-	G	A	L	T	V	G	V	V	T	R	P	F	S	F	E	G	-	-	R	K	R	Q	T	Q	A	A	A	G	V	E	A	M	K	A	A	V	D	T	L	I	V	I	P	N	D	R	L	L	D	I	V	D	-	-	-	-	-	K	S	T	P	M	M	E	A	F	K	E	A	D	N	V	L	R	Q	G	V	Q	G	I	S	D	L	I	A	V	S	G	E	V	N

Member	Chain	UniProtKB	GO term

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-	R	E	I	I	T	L	Q	L	G	Q	C	G	N	Q	I	G	F	E	F	W	K	Q	L	C	A	E	H	G	I	S	P	E	A	I	V	F	A	G	T	D	R	K	D	V	F	F	Y	Q	A	D	D	E	H	Y	I	P	R	A	V	L	L	D	L	E	P	R	V	I	H	S	I	L	N	S	P	Y	A	-	L	Y	N	P	E	N	I	Y	L	S	G	-	-	-	-	-	-	-	G	G	A	G	N	N	W	A	S	G	F	S	-	Q	G	-	E	I	H	E	D	I	F	D	I	I	D	R	E	A	D	G	S	D	S	L	E	G	F	V	L	C	H	S	I	A	G	G	T	G	S	G	L	G	S	Y	L	L	E	R	L	N	D	R	Y	P	-	K	L	V	Q	T	Y	S	V	F	P	N	Q	D	M	S	D	V	V	V	Q	P	Y	N	S	L	L	T	L	K	R	L	T	Q	N	A	D	C	L	V	V	L	D	N	T	A	L	N	-	I	A	T	D	R	L	H	I	Q	N	P	S	F	S	Q	I	N	-	L	V	S	T	I	M	S	A	S	T	T	T	L	R	Y	P	-	-	-	-	-	-	-	-
M	R	E	C	I	S	I	H	V	G	Q	A	G	V	Q	I	G	N	A	C	W	E	L	Y	C	L	E	H	G	I	Q	P	D	G	Q	M	P	S	-	D	D	S	F	N	T	F	F	S	E	T	G	A	G	K	H	V	P	R	A	V	F	V	D	L	E	P	T	V	I	D	E	V	R	T	G	T	Y	R	Q	L	F	H	P	E	Q	L	I	T	G	K	-	-	-	-	-	-	-	E	D	A	A	N	N	Y	A	R	G	H	Y	T	I	G	K	E	I	I	D	L	V	L	D	R	I	R	K	L	A	D	Q	C	T	G	L	Q	G	F	L	V	F	H	S	F	G	G	G	T	G	S	G	F	T	S	L	L	M	E	R	L	S	V	D	Y	G	K	K	S	K	L	E	F	S	I	Y	P	A	P	Q	V	S	T	A	V	V	E	P	Y	N	S	I	L	T	T	H	T	T	L	E	H	S	D	C	A	F	M	V	D	N	E	A	I	Y	D	I	C	R	R	N	L	D	I	E	R	P	T	Y	T	N	L	N	R	L	I	S	Q	I	V	S	S	I	T	A	S	L	R	F	D	-	-	-	-	-	-	-	-
-	A	T	L	K	V	I	G	V	G	G	G	G	N	N	A	V	N	R	M	I	D	H	-	-	-	-	-	G	M	N	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	N	V	E	F	I	A	I	N	T	D	G	Q	A	L	N	-	-	-	-	-	-	-	-	-	L	S	K	A	E	-	S	K	I	Q	I	G	E	K	L	T	R	G	L	G	A	G	A	N	P	E	I	G	K	K	-	A	A	E	E	S	R	E	Q	I	E	D	A	I	Q	-	-	-	-	-	-	-	G	A	D	M	V	F	V	T	S	G	M	G	G	G	T	G	T	G	A	A	P	V	V	A	K	I	A	K	E	M	-	-	G	A	L	T	V	G	V	V	T	R	P	F	S	F	E	G	-	-	R	K	R	Q	T	Q	A	A	A	G	V	E	A	M	K	A	A	V	D	T	L	I	V	I	P	N	D	R	L	L	D	I	V	D	-	-	-	-	-	K	S	T	P	M	M	E	A	F	K	E	A	D	N	V	L	R	Q	G	V	Q	G	I	S	D	L	I	A	V	S	G	E	V	N

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-	R	E	I	I	T	L	Q	L	G	Q	C	G	N	Q	I	G	F	E	F	W	K	Q	L	C	A	E	H	G	I	S	P	E	A	I	V	F	A	G	T	D	R	K	D	V	F	F	Y	Q	A	D	D	E	H	Y	I	P	R	A	V	L	L	D	L	E	P	R	V	I	H	S	I	L	N	S	P	Y	A	-	L	Y	N	P	E	N	I	Y	L	S	G	-	-	-	-	-	-	-	G	G	A	G	N	N	W	A	S	G	F	S	-	Q	G	-	E	I	H	E	D	I	F	D	I	I	D	R	E	A	D	G	S	D	S	L	E	G	F	V	L	C	H	S	I	A	G	G	T	G	S	G	L	G	S	Y	L	L	E	R	L	N	D	R	Y	P	-	K	L	V	Q	T	Y	S	V	F	P	N	Q	D	M	S	D	V	V	V	Q	P	Y	N	S	L	L	T	L	K	R	L	T	Q	N	A	D	C	L	V	V	L	D	N	T	A	L	N	-	I	A	T	D	R	L	H	I	Q	N	P	S	F	S	Q	I	N	-	L	V	S	T	I	M	S	A	S	T	T	T	L	R	Y	P	-	-	-	-	-	-	-	-
M	R	E	C	I	S	I	H	V	G	Q	A	G	V	Q	I	G	N	A	C	W	E	L	Y	C	L	E	H	G	I	Q	P	D	G	Q	M	P	S	-	D	D	S	F	N	T	F	F	S	E	T	G	A	G	K	H	V	P	R	A	V	F	V	D	L	E	P	T	V	I	D	E	V	R	T	G	T	Y	R	Q	L	F	H	P	E	Q	L	I	T	G	K	-	-	-	-	-	-	-	E	D	A	A	N	N	Y	A	R	G	H	Y	T	I	G	K	E	I	I	D	L	V	L	D	R	I	R	K	L	A	D	Q	C	T	G	L	Q	G	F	L	V	F	H	S	F	G	G	G	T	G	S	G	F	T	S	L	L	M	E	R	L	S	V	D	Y	G	K	K	S	K	L	E	F	S	I	Y	P	A	P	Q	V	S	T	A	V	V	E	P	Y	N	S	I	L	T	T	H	T	T	L	E	H	S	D	C	A	F	M	V	D	N	E	A	I	Y	D	I	C	R	R	N	L	D	I	E	R	P	T	Y	T	N	L	N	R	L	I	S	Q	I	V	S	S	I	T	A	S	L	R	F	D	-	-	-	-	-	-	-	-
-	A	T	L	K	V	I	G	V	G	G	G	G	N	N	A	V	N	R	M	I	D	H	-	-	-	-	-	G	M	N	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	N	V	E	F	I	A	I	N	T	D	G	Q	A	L	N	-	-	-	-	-	-	-	-	-	L	S	K	A	E	-	S	K	I	Q	I	G	E	K	L	T	R	G	L	G	A	G	A	N	P	E	I	G	K	K	-	A	A	E	E	S	R	E	Q	I	E	D	A	I	Q	-	-	-	-	-	-	-	G	A	D	M	V	F	V	T	S	G	M	G	G	G	T	G	T	G	A	A	P	V	V	A	K	I	A	K	E	M	-	-	G	A	L	T	V	G	V	V	T	R	P	F	S	F	E	G	-	-	R	K	R	Q	T	Q	A	A	A	G	V	E	A	M	K	A	A	V	D	T	L	I	V	I	P	N	D	R	L	L	D	I	V	D	-	-	-	-	-	K	S	T	P	M	M	E	A	F	K	E	A	D	N	V	L	R	Q	G	V	Q	G	I	S	D	L	I	A	V	S	G	E	V	N

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-	R	E	I	I	T	L	Q	L	G	Q	C	G	N	Q	I	G	F	E	F	W	K	Q	L	C	A	E	H	G	I	S	P	E	A	I	V	F	A	G	T	D	R	K	D	V	F	F	Y	Q	A	D	D	E	H	Y	I	P	R	A	V	L	L	D	L	E	P	R	V	I	H	S	I	L	N	S	P	Y	A	-	L	Y	N	P	E	N	I	Y	L	S	G	-	-	-	-	-	-	-	G	G	A	G	N	N	W	A	S	G	F	S	-	Q	G	-	E	I	H	E	D	I	F	D	I	I	D	R	E	A	D	G	S	D	S	L	E	G	F	V	L	C	H	S	I	A	G	G	T	G	S	G	L	G	S	Y	L	L	E	R	L	N	D	R	Y	P	-	K	L	V	Q	T	Y	S	V	F	P	N	Q	D	M	S	D	V	V	V	Q	P	Y	N	S	L	L	T	L	K	R	L	T	Q	N	A	D	C	L	V	V	L	D	N	T	A	L	N	-	I	A	T	D	R	L	H	I	Q	N	P	S	F	S	Q	I	N	-	L	V	S	T	I	M	S	A	S	T	T	T	L	R	Y	P	-	-	-	-	-	-	-	-
M	R	E	C	I	S	I	H	V	G	Q	A	G	V	Q	I	G	N	A	C	W	E	L	Y	C	L	E	H	G	I	Q	P	D	G	Q	M	P	S	-	D	D	S	F	N	T	F	F	S	E	T	G	A	G	K	H	V	P	R	A	V	F	V	D	L	E	P	T	V	I	D	E	V	R	T	G	T	Y	R	Q	L	F	H	P	E	Q	L	I	T	G	K	-	-	-	-	-	-	-	E	D	A	A	N	N	Y	A	R	G	H	Y	T	I	G	K	E	I	I	D	L	V	L	D	R	I	R	K	L	A	D	Q	C	T	G	L	Q	G	F	L	V	F	H	S	F	G	G	G	T	G	S	G	F	T	S	L	L	M	E	R	L	S	V	D	Y	G	K	K	S	K	L	E	F	S	I	Y	P	A	P	Q	V	S	T	A	V	V	E	P	Y	N	S	I	L	T	T	H	T	T	L	E	H	S	D	C	A	F	M	V	D	N	E	A	I	Y	D	I	C	R	R	N	L	D	I	E	R	P	T	Y	T	N	L	N	R	L	I	S	Q	I	V	S	S	I	T	A	S	L	R	F	D	-	-	-	-	-	-	-	-
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