Superfamily : 52425 [ Cryptochrome/photolyase, N-terminal domain ]
Class : Alpha and beta proteins (a/b)
Fold : Cryptochrome/photolyase, N-terminal domain
# of Members : 7
Superposed Structure
solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x
 
                             10        20        30        40        50  
d1dnpa2  (   1 )         ttHLVWFrqdLrlhdNlALaaACrns-----sArVLALYIATprq
d1iqra2  (   2 )         gpLLVWHrgdlrLhdHpALleAlar------g-pVVGLVVLDpnn
d1np7a2  (   1 )    mkhvppTVLVWFrnDlrlhdHePLhrAlks------glaItAVYCYdprq
d1owla2  (   3 )         aPILFWHrrDlrLsdNiGLaaAraq------saqLIGLfCLDpqi
d1u3da2  (  13 )          cSIVWFrrDlrvedNpALaaAvra-------gpVIALFVwApee
d2wq7a1  (   2 )     dsqRsTLVHWFrkGlrLhdNpALshIFtaAnaapgryFVRPIfIldpgi
d6ptza1  (   1 )     mp--hrTIHLFRkGlrlhdNpTLlaALes---Se---tIyPVyvLDrrf
                           bbbb          aaaaaaaa          bbbbbbb    

                             60        70        80        90        100 
d1dnpa2  (  41 )    wa----t-hnmsprqAelinaqLngLQiaLAekGIpLlfrevddfvaSve
d1iqra2  (  40 )    lktt--------prrrAwfLenVraLReaYrargGALWVleg----lPwe
d1np7a2  (  45 )    FaqthqgfaktgpwrSnflqqsVqnLaesLqkvgNkLLvTtg----lPeq
d1owla2  (  42 )    lqs-----admaparVaylqgcLqeLqqrYqqagSrLLLLqg----dPqh
d1u3da2  (  50 )    eg----h-yhpgrvsrwwlknslaqLdssLrslgTÇLItkrst---dSVa
d2wq7a1  (  51 )    ld----wm-qvgAnrwrflQqtLedLdnqLrklnsrLFVVrg----kpae
d6ptza1  (  42 )    la----samhigalrwHflLqsLedLhknLsrlgArLLViqg----eyes
                                aaaaaaaaaaaaaaaaaaaa    bbbbb      aaa

                             110       120       130       140       150 
d1dnpa2  (  86 )    iVkqVCaensVthLfYnyqyevnerardveVeraLr--nvvCeGfdDsvi
d1iqra2  (  78 )    kVPeAArrlkAkaVYALtshtpyGryrDgrVreaLp---vpLhllpaphl
d1np7a2  (  91 )    vIPqIAkqInAktIYyhrevtqeeldvErnLvkqLtilgieAkGywgstl
d1owla2  (  83 )    lIpqLAqqLqAeAVyWnqdiepyGrdrDgqVaaaLktagiravqlwDqll
d1u3da2  (  92 )    sLldvvksTgAsqIffNhLydplSlvrdhrAkdvLtaqgiaVrsfnAdll
d2wq7a1  (  92 )    VFprIFksWrVeMLTFEtdiepySvtrdaaVqklAkaegVrVethcshti
d6ptza1  (  84 )    vLrdHvqkwnItQVTLDaEmepfykemeanIrrLGaelgFeVlsrvghsl
                    aaaaaaaa    bbbbb    aaaaaaaaaaaaaaa    bbbbb     

                             160       170       180       190       200 
d1dnpa2  ( 134 )    LppgaVmtg-nhemykvftpfknawlkrlregmpe-cvaapkvrssgsie
d1iqra2  ( 125 )    lppd-lp-----rayrvytpfsrlyr------gaapplpppeaLpkgp--
d1np7a2  ( 141 )    chpedlpfsiqd-lpdlftkfrkdiek--kkisirpcffapsqLlpsp--
d1owla2  ( 133 )    HspdqI-lsgsgnpysvygpfwknwqa----qpkptpvatPteLvdLs--
d1u3da2  ( 142 )    YepweVtde-lgrpfsmfaafwerClsM--pydpespllppkkIisgdvs
d2wq7a1  ( 142 )    ynpelViaknlgkapityqkflgiveql---k-vpkvlgvPek-----Lk
d6ptza1  ( 134 )    ydtkrildlnggspPltykrflhIlsqL---gdpevpvrnLta---edFq
                                     aaaaaaaaa                        

                             210       220       230 
d1dnpa2  ( 182 )    pspsitLnyprqsfdtahf              
d1iqra2  ( 161 )    ---eeg----------eIpredpg         
d1np7a2  ( 186 )    ------------nikLeltapppefFpqin--f
d1owla2  ( 176 )    ---peqltaIaplllseLptl-kqlgfdwdggf
d1u3da2  ( 189 )    kçvadpLvF                        
d2wq7a1  ( 183 )    nMptppkdeveqkdsaaYdcPtmkqLVkrpeel
d6ptza1  ( 178 )    rCmSpePg-----laerYrVPvpadLeippqsl
 

 

Domain IDNameFamilySourceDomainSTRING-DB
DNA photolyaseCryptochrome/photolyase, N-terminal domainEscherichia coli [TaxId: 562]view
DNA photolyaseCryptochrome/photolyase, N-terminal domainThermus thermophilus [TaxId: 274]view
CryptochromeCryptochrome/photolyase, N-terminal domainSynechocystis sp. PCC 6803 [TaxId: 1148]view
DNA photolyaseCryptochrome/photolyase, N-terminal domainSynechococcus elongatus [TaxId: 32046]view
CryptochromeCryptochrome/photolyase, N-terminal domainThale cress (Arabidopsis thaliana) [TaxId: 3702]view
automated matchesautomated matchesFruit fly (Drosophila melanogaster) [TaxId: 7227]view
automated matchesautomated matchesDomestic pigeon (Columba livia) [TaxId: 8932]view

 

No outliers

FeatureDownload
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

 

10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230
- - - - - T T H L V W F R Q D L R L H D N L A L A A A C R N S - - - - - S A R V L A L Y I A T P R Q W A - - - - T - H N M S P R Q A E L I N A Q L N G L Q I A L A E K G I P L L F R E V D D F V A S V E I V K Q V C A E N S V T H L F Y N Y Q Y E V N E R A R D V E V E R A L R - - N V V C E G F D D S V I L P P G A V M T G - N H E M Y K V F T P F K N A W L K R L R E G M P E - C V A A P K V R S S G S I E P S P S I T L N Y P R Q S F D T A H F - - - - - - - - - - - - - -
- - - - - G P L L V W H R G D L R L H D H P A L L E A L A R - - - - - - G - P V V G L V V L D P N N L K T T - - - - - - - - P R R R A W F L E N V R A L R E A Y R A R G G A L W V L E G - - - - L P W E K V P E A A R R L K A K A V Y A L T S H T P Y G R Y R D G R V R E A L P - - - V P L H L L P A P H L L P P D - L P - - - - - R A Y R V Y T P F S R L Y R - - - - - - G A A P P L P P P E A L P K G P - - - - - E E G - - - - - - - - - - E I P R E D P G - - - - - - - - -
M K H V P P T V L V W F R N D L R L H D H E P L H R A L K S - - - - - - G L A I T A V Y C Y D P R Q F A Q T H Q G F A K T G P W R S N F L Q Q S V Q N L A E S L Q K V G N K L L V T T G - - - - L P E Q V I P Q I A K Q I N A K T I Y Y H R E V T Q E E L D V E R N L V K Q L T I L G I E A K G Y W G S T L C H P E D L P F S I Q D - L P D L F T K F R K D I E K - - K K I S I R P C F F A P S Q L L P S P - - - - - - - - - - - - - - N I K L E L T A P P P E F F P Q I N - - F
- - - - - A P I L F W H R R D L R L S D N I G L A A A R A Q - - - - - - S A Q L I G L F C L D P Q I L Q S - - - - - A D M A P A R V A Y L Q G C L Q E L Q Q R Y Q Q A G S R L L L L Q G - - - - D P Q H L I P Q L A Q Q L Q A E A V Y W N Q D I E P Y G R D R D G Q V A A A L K T A G I R A V Q L W D Q L L H S P D Q I - L S G S G N P Y S V Y G P F W K N W Q A - - - - Q P K P T P V A T P T E L V D L S - - - - - P E Q L T A I A P L L L S E L P T L - K Q L G F D W D G G F
- - - - - - C S I V W F R R D L R V E D N P A L A A A V R A - - - - - - - G P V I A L F V W A P E E E G - - - - H - Y H P G R V S R W W L K N S L A Q L D S S L R S L G T C L I T K R S T - - - D S V A S L L D V V K S T G A S Q I F F N H L Y D P L S L V R D H R A K D V L T A Q G I A V R S F N A D L L Y E P W E V T D E - L G R P F S M F A A F W E R C L S M - - P Y D P E S P L L P P K K I I S G D V S K C V A D P L V F - - - - - - - - - - - - - - - - - - - - - - - -
- D S Q R S T L V H W F R K G L R L H D N P A L S H I F T A A N A A P G R Y F V R P I F I L D P G I L D - - - - W M - Q V G A N R W R F L Q Q T L E D L D N Q L R K L N S R L F V V R G - - - - K P A E V F P R I F K S W R V E M L T F E T D I E P Y S V T R D A A V Q K L A K A E G V R V E T H C S H T I Y N P E L V I A K N L G K A P I T Y Q K F L G I V E Q L - - - K - V P K V L G V P E K - - - - - L K N M P T P P K D E V E Q K D S A A Y D C P T M K Q L V K R P E E L
- M P - - H R T I H L F R K G L R L H D N P T L L A A L E S - - - S E - - - T I Y P V Y V L D R R F L A - - - - S A M H I G A L R W H F L L Q S L E D L H K N L S R L G A R L L V I Q G - - - - E Y E S V L R D H V Q K W N I T Q V T L D A E M E P F Y K E M E A N I R R L G A E L G F E V L S R V G H S L Y D T K R I L D L N G G S P P L T Y K R F L H I L S Q L - - - G D P E V P V R N L T A - - - E D F Q R C M S P E P G - - - - - L A E R Y R V P V P A D L E I P P Q S L

 

 

 

 

 

Member Chain UniProtKB GO term
d1dnpa2 A P00914 GO:0000166
d1dnpa2 A P00914 GO:0000719
d1dnpa2 A P00914 GO:0003677
d1dnpa2 A P00914 GO:0003684
d1dnpa2 A P00914 GO:0003904
d1dnpa2 A P00914 GO:0005515
d1dnpa2 A P00914 GO:0006139
d1dnpa2 A P00914 GO:0006281
d1dnpa2 A P00914 GO:0006950
d1dnpa2 A P00914 GO:0007603
d1dnpa2 A P00914 GO:0009416
d1dnpa2 A P00914 GO:0016829
d1dnpa2 A P00914 GO:0071949
d1dnpa2 A P00914 GO:0097159
d1iqra2 A P61497 GO:0000166
d1iqra2 A P61497 GO:0003677
d1iqra2 A P61497 GO:0003904
d1iqra2 A P61497 GO:0006139
d1iqra2 A P61497 GO:0006281
d1iqra2 A P61497 GO:0006950
d1iqra2 A P61497 GO:0009416
d1iqra2 A P61497 GO:0016829
d1iqra2 A P61497 GO:0071949
d1iqra2 A P61497 GO:0097159
d1iqra2 A P61497 GO:0000166
d1iqra2 A P61497 GO:0003677
d1iqra2 A P61497 GO:0003904
d1iqra2 A P61497 GO:0006139
d1iqra2 A P61497 GO:0006281
d1iqra2 A P61497 GO:0006950
d1iqra2 A P61497 GO:0009416
d1iqra2 A P61497 GO:0016829
d1iqra2 A P61497 GO:0071949
d1iqra2 A P61497 GO:0097159
d1np7a2 A P77967 GO:0000719
d1np7a2 A P77967 GO:0003677
d1np7a2 A P77967 GO:0003913
d1np7a2 A P77967 GO:0006139
d1np7a2 A P77967 GO:0006281
d1np7a2 A P77967 GO:0006950
d1np7a2 A P77967 GO:0071949
d1np7a2 A P77967 GO:0097159
d1np7a2 A P77967 GO:0000719
d1np7a2 A P77967 GO:0003677
d1np7a2 A P77967 GO:0003913
d1np7a2 A P77967 GO:0006139
d1np7a2 A P77967 GO:0006281
d1np7a2 A P77967 GO:0006950
d1np7a2 A P77967 GO:0071949
d1np7a2 A P77967 GO:0097159
d1owla2 A P05327 GO:0000166
d1owla2 A P05327 GO:0003677
d1owla2 A P05327 GO:0003904
d1owla2 A P05327 GO:0006139
d1owla2 A P05327 GO:0006281
d1owla2 A P05327 GO:0006950
d1owla2 A P05327 GO:0009416
d1owla2 A P05327 GO:0016829
d1owla2 A P05327 GO:0071949
d1owla2 A P05327 GO:0097159
d1owla2 A P05327 GO:0000166
d1owla2 A P05327 GO:0003677
d1owla2 A P05327 GO:0003904
d1owla2 A P05327 GO:0006139
d1owla2 A P05327 GO:0006281
d1owla2 A P05327 GO:0006950
d1owla2 A P05327 GO:0009416
d1owla2 A P05327 GO:0016829
d1owla2 A P05327 GO:0071949
d1owla2 A P05327 GO:0097159
d1u3da2 A Q43125 GO:0009785
d1u3da2 A Q43125 GO:0009882
d1u3da2 A Q43125 GO:0009785
d1u3da2 A Q43125 GO:0009882
 
Contact: Prof. R. Sowdhamini - mini@ncbs.res.in