PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1k8ea2  (  71 )      vp------nAIDTAg----glgTVnVSTASAILLSl-vnpVAKHgnra
d2elca2  (  66 )    lrVh----rrpLLDIvgTggdgkgLMnLsTLAALVAAaggVAVAKHgnra
d4eada2  (  71 )     dwkslhlngpiVDKhstgG---vGdVTSLMLGPMVAAcgGyIPMIsgrg
                                bb              aaaaaaaa      bbbb    

                             60        70        80        90        100 
d1k8ea2  ( 112 )    vsgksgsADVLeaL-GYnIiVpperakeLVnkTnFVFLFaq-yyhpamkn
d2elca2  ( 112 )    assragSADlLeaL-gVdLeapperVgeAIeelgFGFLfar-vfhpamrh
d4eada2  ( 117 )    lghtggtLdKLesIpgFdIfpddnrfreIIkdVgVAIiGqtsslapadkr
                          aaaaa           aaaaaaaaaaa bbbb            

                             110       120       130       140       150 
d1k8ea2  ( 160 )    vanvrktlg-irt-ifnilgpLt--NpanAkyQLMGVf------------
d2elca2  ( 160 )    vapvraelg-vrt-vfnllgPlt--NpAgAdAYVLGVf------------
d4eada2  ( 167 )    fyatRditatvdsipliTasiLakKlaEgLdALVMDVKvgsgAfMptyel
                     aaaa                          bbbbb              

                             160       170       180       190       200 
d1k8ea2  ( 194 )    skdhLdlLSksAyeldfnkIILVyGepgidEVSPignTfMkIVskrgiee
d2elca2  ( 194 )    spewLapMaeaLerlgA-rGLVVhGe-gAdeLVL-geNrVvevg---kga
d4eada2  ( 217 )    SeaLaeaIvgvAngagv-rTtAlltdMn----------------------
                        aaaaaaaa      bbbbbbb                         

                             210       220       230       240       250 
d1k8ea2  ( 244 )    vklnVtdFgispIpiekLiVnsaedSAikIVrAFlgkd--ehVaeFIKIN
d2elca2  ( 238 )    yaLtPeeVgLkrapleaLkGggpeenaalArrLLkGeek-gpladAVALa
d4eada2  ( 244 )    --------------qvLAssagnavEVreAVqFLtgeyrnprLfdvTMaL
                                           aaaaaaaaaaa       aaaaaaaaa

                             260       270       280       290       300 
d1k8ea2  ( 292 )    TAVALfALdrVgdfreGyeyAdhLie--kSldkLneIIsmNgdvtkLkti
d2elca2  ( 287 )    AGAGFyAAgkTpslkeGValArevLasgeAylLLerYvafLra       
d4eada2  ( 280 )    CVeMLisGklAkddaeArakLqavLdngkAaevFgrMVaaQkGptdFven
                    aaaaaaa      aaaaaaaaaaaa    aaaaaaaaaaa          

                          
d1k8ea2  ( 340 )    vvks  
d2elca2                   
d4eada2  ( 330 )    yakyLp

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1k8ea2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1k8ea2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Anthranilate phosphoribosyltransferase (TrpD)	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain	Sulfolobus solfataricus [TaxId: 2287]	view
d2elca2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2elca2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Anthranilate phosphoribosyltransferase (TrpD)	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain	Thermus thermophilus [TaxId: 274]	view
d4eada2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4eada2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Thymidine phosphorylase	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain	Escherichia coli [TaxId: 562]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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L	R	V	H	-	-	-	-	R	R	P	L	L	D	I	V	G	T	G	G	D	G	K	G	L	M	N	L	S	T	L	A	A	L	V	A	A	A	G	G	V	A	V	A	K	H	G	N	R	A	A	S	S	R	A	G	S	A	D	L	L	E	A	L	-	G	V	D	L	E	A	P	P	E	R	V	G	E	A	I	E	E	L	G	F	G	F	L	F	A	R	-	V	F	H	P	A	M	R	H	V	A	P	V	R	A	E	L	G	-	V	R	T	-	V	F	N	L	L	G	P	L	T	-	-	N	P	A	G	A	D	A	Y	V	L	G	V	F	-	-	-	-	-	-	-	-	-	-	-	-	S	P	E	W	L	A	P	M	A	E	A	L	E	R	L	G	A	-	R	G	L	V	V	H	G	E	-	G	A	D	E	L	V	L	-	G	E	N	R	V	V	E	V	G	-	-	-	K	G	A	Y	A	L	T	P	E	E	V	G	L	K	R	A	P	L	E	A	L	K	G	G	G	P	E	E	N	A	A	L	A	R	R	L	L	K	G	E	E	K	-	G	P	L	A	D	A	V	A	L	A	A	G	A	G	F	Y	A	A	G	K	T	P	S	L	K	E	G	V	A	L	A	R	E	V	L	A	S	G	E	A	Y	L	L	L	E	R	Y	V	A	F	L	R	A	-	-	-	-	-	-	-	-	-	-	-	-	-
-	D	W	K	S	L	H	L	N	G	P	I	V	D	K	H	S	T	G	G	-	-	-	V	G	D	V	T	S	L	M	L	G	P	M	V	A	A	C	G	G	Y	I	P	M	I	S	G	R	G	L	G	H	T	G	G	T	L	D	K	L	E	S	I	P	G	F	D	I	F	P	D	D	N	R	F	R	E	I	I	K	D	V	G	V	A	I	I	G	Q	T	S	S	L	A	P	A	D	K	R	F	Y	A	T	R	D	I	T	A	T	V	D	S	I	P	L	I	T	A	S	I	L	A	K	K	L	A	E	G	L	D	A	L	V	M	D	V	K	V	G	S	G	A	F	M	P	T	Y	E	L	S	E	A	L	A	E	A	I	V	G	V	A	N	G	A	G	V	-	R	T	T	A	L	L	T	D	M	N	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Q	V	L	A	S	S	A	G	N	A	V	E	V	R	E	A	V	Q	F	L	T	G	E	Y	R	N	P	R	L	F	D	V	T	M	A	L	C	V	E	M	L	I	S	G	K	L	A	K	D	D	A	E	A	R	A	K	L	Q	A	V	L	D	N	G	K	A	A	E	V	F	G	R	M	V	A	A	Q	K	G	P	T	D	F	V	E	N	Y	A	K	Y	L	P

Member	Chain	UniProtKB	GO term
d2elca2	A	Q5SH88	GO:0000162
d2elca2	A	Q5SH88	GO:0000287
d2elca2	A	Q5SH88	GO:0004048
d2elca2	A	Q5SH88	GO:0005829
d2elca2	A	Q5SH88	GO:0016757
d2elca2	A	Q5SH88	GO:0016763
d2elca2	A	Q5SH88	GO:0046872
d2elca2	A	Q5SH88	GO:0000162
d2elca2	A	Q5SH88	GO:0000287
d2elca2	A	Q5SH88	GO:0004048
d2elca2	A	Q5SH88	GO:0005829
d2elca2	A	Q5SH88	GO:0016757
d2elca2	A	Q5SH88	GO:0016763
d2elca2	A	Q5SH88	GO:0046872

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L	R	V	H	-	-	-	-	R	R	P	L	L	D	I	V	G	T	G	G	D	G	K	G	L	M	N	L	S	T	L	A	A	L	V	A	A	A	G	G	V	A	V	A	K	H	G	N	R	A	A	S	S	R	A	G	S	A	D	L	L	E	A	L	-	G	V	D	L	E	A	P	P	E	R	V	G	E	A	I	E	E	L	G	F	G	F	L	F	A	R	-	V	F	H	P	A	M	R	H	V	A	P	V	R	A	E	L	G	-	V	R	T	-	V	F	N	L	L	G	P	L	T	-	-	N	P	A	G	A	D	A	Y	V	L	G	V	F	-	-	-	-	-	-	-	-	-	-	-	-	S	P	E	W	L	A	P	M	A	E	A	L	E	R	L	G	A	-	R	G	L	V	V	H	G	E	-	G	A	D	E	L	V	L	-	G	E	N	R	V	V	E	V	G	-	-	-	K	G	A	Y	A	L	T	P	E	E	V	G	L	K	R	A	P	L	E	A	L	K	G	G	G	P	E	E	N	A	A	L	A	R	R	L	L	K	G	E	E	K	-	G	P	L	A	D	A	V	A	L	A	A	G	A	G	F	Y	A	A	G	K	T	P	S	L	K	E	G	V	A	L	A	R	E	V	L	A	S	G	E	A	Y	L	L	L	E	R	Y	V	A	F	L	R	A	-	-	-	-	-	-	-	-	-	-	-	-	-
-	D	W	K	S	L	H	L	N	G	P	I	V	D	K	H	S	T	G	G	-	-	-	V	G	D	V	T	S	L	M	L	G	P	M	V	A	A	C	G	G	Y	I	P	M	I	S	G	R	G	L	G	H	T	G	G	T	L	D	K	L	E	S	I	P	G	F	D	I	F	P	D	D	N	R	F	R	E	I	I	K	D	V	G	V	A	I	I	G	Q	T	S	S	L	A	P	A	D	K	R	F	Y	A	T	R	D	I	T	A	T	V	D	S	I	P	L	I	T	A	S	I	L	A	K	K	L	A	E	G	L	D	A	L	V	M	D	V	K	V	G	S	G	A	F	M	P	T	Y	E	L	S	E	A	L	A	E	A	I	V	G	V	A	N	G	A	G	V	-	R	T	T	A	L	L	T	D	M	N	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Q	V	L	A	S	S	A	G	N	A	V	E	V	R	E	A	V	Q	F	L	T	G	E	Y	R	N	P	R	L	F	D	V	T	M	A	L	C	V	E	M	L	I	S	G	K	L	A	K	D	D	A	E	A	R	A	K	L	Q	A	V	L	D	N	G	K	A	A	E	V	F	G	R	M	V	A	A	Q	K	G	P	T	D	F	V	E	N	Y	A	K	Y	L	P

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-	-	V	P	-	-	-	-	-	-	N	A	I	D	T	A	G	-	-	-	-	G	L	G	T	V	N	V	S	T	A	S	A	I	L	L	S	L	-	V	N	P	V	A	K	H	G	N	R	A	V	S	G	K	S	G	S	A	D	V	L	E	A	L	-	G	Y	N	I	I	V	P	P	E	R	A	K	E	L	V	N	K	T	N	F	V	F	L	F	A	Q	-	Y	Y	H	P	A	M	K	N	V	A	N	V	R	K	T	L	G	-	I	R	T	-	I	F	N	I	L	G	P	L	T	-	-	N	P	A	N	A	K	Y	Q	L	M	G	V	F	-	-	-	-	-	-	-	-	-	-	-	-	S	K	D	H	L	D	L	L	S	K	S	A	Y	E	L	D	F	N	K	I	I	L	V	Y	G	E	P	G	I	D	E	V	S	P	I	G	N	T	F	M	K	I	V	S	K	R	G	I	E	E	V	K	L	N	V	T	D	F	G	I	S	P	I	P	I	E	K	L	I	V	N	S	A	E	D	S	A	I	K	I	V	R	A	F	L	G	K	D	-	-	E	H	V	A	E	F	I	K	I	N	T	A	V	A	L	F	A	L	D	R	V	G	D	F	R	E	G	Y	E	Y	A	D	H	L	I	E	-	-	K	S	L	D	K	L	N	E	I	I	S	M	N	G	D	V	T	K	L	K	T	I	V	V	K	S	-	-
L	R	V	H	-	-	-	-	R	R	P	L	L	D	I	V	G	T	G	G	D	G	K	G	L	M	N	L	S	T	L	A	A	L	V	A	A	A	G	G	V	A	V	A	K	H	G	N	R	A	A	S	S	R	A	G	S	A	D	L	L	E	A	L	-	G	V	D	L	E	A	P	P	E	R	V	G	E	A	I	E	E	L	G	F	G	F	L	F	A	R	-	V	F	H	P	A	M	R	H	V	A	P	V	R	A	E	L	G	-	V	R	T	-	V	F	N	L	L	G	P	L	T	-	-	N	P	A	G	A	D	A	Y	V	L	G	V	F	-	-	-	-	-	-	-	-	-	-	-	-	S	P	E	W	L	A	P	M	A	E	A	L	E	R	L	G	A	-	R	G	L	V	V	H	G	E	-	G	A	D	E	L	V	L	-	G	E	N	R	V	V	E	V	G	-	-	-	K	G	A	Y	A	L	T	P	E	E	V	G	L	K	R	A	P	L	E	A	L	K	G	G	G	P	E	E	N	A	A	L	A	R	R	L	L	K	G	E	E	K	-	G	P	L	A	D	A	V	A	L	A	A	G	A	G	F	Y	A	A	G	K	T	P	S	L	K	E	G	V	A	L	A	R	E	V	L	A	S	G	E	A	Y	L	L	L	E	R	Y	V	A	F	L	R	A	-	-	-	-	-	-	-	-	-	-	-	-	-
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									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160										170										180										190										200										210										220										230										240										250										260										270										280										290										300
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