PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1dlja3  ( 295 )    akqIinvLkeqespvkvVGVYrLimksnsdnfreSaIkdvIdiLkskdik
d1mv8a3  ( 301 )    vqkAfdlIts----htkVGLLGLSfkagtddLreSplveLAemLigkgye
                     aaaaaaa         bbbb              aaaaaaaaaa     

                             60        70        80        90        100 
d1dlja3  ( 345 )    IIIyEpmln---------kle--sedqSvlvndlenFkkqAnIIVTnryd
d1mv8a3  ( 349 )    LrIfDrnVeyArvhgankyIesiphVSslLvsdldeVvasSdVLVLGngd
                    bbbb                             aaaaaaa  bbb     

                             110       120       130    
d1dlja3  ( 384 )    neLqdvk----nkVysrdifgrd             
d1mv8a3  ( 402 )    -lFvdlVnktpsgkkLVDlvgfMphtttaqaeGicw
                                  b

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1dlja3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1dlja3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain	UDP-glucose/GDP-mannose dehydrogenase C-terminal domain	Streptococcus pyogenes [TaxId: 1314]		view
d1mv8a3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1mv8a3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	GDP-mannose 6-dehydrogenase, GDP-binding domain	UDP-glucose/GDP-mannose dehydrogenase C-terminal domain	Pseudomonas aeruginosa [TaxId: 287]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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A	K	Q	I	I	N	V	L	K	E	Q	E	S	P	V	K	V	V	G	V	Y	R	L	I	M	K	S	N	S	D	N	F	R	E	S	A	I	K	D	V	I	D	I	L	K	S	K	D	I	K	I	I	I	Y	E	P	M	L	N	-	-	-	-	-	-	-	-	-	K	L	E	-	-	S	E	D	Q	S	V	L	V	N	D	L	E	N	F	K	K	Q	A	N	I	I	V	T	N	R	Y	D	N	E	L	Q	D	V	K	-	-	-	-	N	K	V	Y	S	R	D	I	F	G	R	D	-	-	-	-	-	-	-	-	-	-	-	-	-
V	Q	K	A	F	D	L	I	T	S	-	-	-	-	H	T	K	V	G	L	L	G	L	S	F	K	A	G	T	D	D	L	R	E	S	P	L	V	E	L	A	E	M	L	I	G	K	G	Y	E	L	R	I	F	D	R	N	V	E	Y	A	R	V	H	G	A	N	K	Y	I	E	S	I	P	H	V	S	S	L	L	V	S	D	L	D	E	V	V	A	S	S	D	V	L	V	L	G	N	G	D	-	L	F	V	D	L	V	N	K	T	P	S	G	K	K	L	V	D	L	V	G	F	M	P	H	T	T	T	A	Q	A	E	G	I	C	W

Member	Chain	UniProtKB	GO term
d1dlja3	A	P0C0F4	GO:0000271
d1dlja3	A	P0C0F4	GO:0003979
d1dlja3	A	P0C0F4	GO:0006065
d1dlja3	A	P0C0F4	GO:0016491
d1dlja3	A	P0C0F4	GO:0016616
d1dlja3	A	P0C0F4	GO:0051287
d1dlja3	A	P0C0F4	GO:0000271
d1dlja3	A	P0C0F4	GO:0003979
d1dlja3	A	P0C0F4	GO:0006065
d1dlja3	A	P0C0F4	GO:0016491
d1dlja3	A	P0C0F4	GO:0016616
d1dlja3	A	P0C0F4	GO:0051287
d1mv8a3	A	P11759	GO:0006970
d1mv8a3	A	P11759	GO:0016491
d1mv8a3	A	P11759	GO:0016616
d1mv8a3	A	P11759	GO:0036460
d1mv8a3	A	P11759	GO:0042121
d1mv8a3	A	P11759	GO:0044010
d1mv8a3	A	P11759	GO:0047919
d1mv8a3	A	P11759	GO:0051287
d1mv8a3	A	P11759	GO:0006970
d1mv8a3	A	P11759	GO:0016491
d1mv8a3	A	P11759	GO:0016616
d1mv8a3	A	P11759	GO:0036460
d1mv8a3	A	P11759	GO:0042121
d1mv8a3	A	P11759	GO:0044010
d1mv8a3	A	P11759	GO:0047919
d1mv8a3	A	P11759	GO:0051287

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A	K	Q	I	I	N	V	L	K	E	Q	E	S	P	V	K	V	V	G	V	Y	R	L	I	M	K	S	N	S	D	N	F	R	E	S	A	I	K	D	V	I	D	I	L	K	S	K	D	I	K	I	I	I	Y	E	P	M	L	N	-	-	-	-	-	-	-	-	-	K	L	E	-	-	S	E	D	Q	S	V	L	V	N	D	L	E	N	F	K	K	Q	A	N	I	I	V	T	N	R	Y	D	N	E	L	Q	D	V	K	-	-	-	-	N	K	V	Y	S	R	D	I	F	G	R	D	-	-	-	-	-	-	-	-	-	-	-	-	-
V	Q	K	A	F	D	L	I	T	S	-	-	-	-	H	T	K	V	G	L	L	G	L	S	F	K	A	G	T	D	D	L	R	E	S	P	L	V	E	L	A	E	M	L	I	G	K	G	Y	E	L	R	I	F	D	R	N	V	E	Y	A	R	V	H	G	A	N	K	Y	I	E	S	I	P	H	V	S	S	L	L	V	S	D	L	D	E	V	V	A	S	S	D	V	L	V	L	G	N	G	D	-	L	F	V	D	L	V	N	K	T	P	S	G	K	K	L	V	D	L	V	G	F	M	P	H	T	T	T	A	Q	A	E	G	I	C	W

									10										20										30										40										50										60										70										80										90										100										110										120										130
A	K	Q	I	I	N	V	L	K	E	Q	E	S	P	V	K	V	V	G	V	Y	R	L	I	M	K	S	N	S	D	N	F	R	E	S	A	I	K	D	V	I	D	I	L	K	S	K	D	I	K	I	I	I	Y	E	P	M	L	N	-	-	-	-	-	-	-	-	-	K	L	E	-	-	S	E	D	Q	S	V	L	V	N	D	L	E	N	F	K	K	Q	A	N	I	I	V	T	N	R	Y	D	N	E	L	Q	D	V	K	-	-	-	-	N	K	V	Y	S	R	D	I	F	G	R	D	-	-	-	-	-	-	-	-	-	-	-	-	-
V	Q	K	A	F	D	L	I	T	S	-	-	-	-	H	T	K	V	G	L	L	G	L	S	F	K	A	G	T	D	D	L	R	E	S	P	L	V	E	L	A	E	M	L	I	G	K	G	Y	E	L	R	I	F	D	R	N	V	E	Y	A	R	V	H	G	A	N	K	Y	I	E	S	I	P	H	V	S	S	L	L	V	S	D	L	D	E	V	V	A	S	S	D	V	L	V	L	G	N	G	D	-	L	F	V	D	L	V	N	K	T	P	S	G	K	K	L	V	D	L	V	G	F	M	P	H	T	T	T	A	Q	A	E	G	I	C	W

									10										20										30										40										50										60										70										80										90										100										110										120										130
A	K	Q	I	I	N	V	L	K	E	Q	E	S	P	V	K	V	V	G	V	Y	R	L	I	M	K	S	N	S	D	N	F	R	E	S	A	I	K	D	V	I	D	I	L	K	S	K	D	I	K	I	I	I	Y	E	P	M	L	N	-	-	-	-	-	-	-	-	-	K	L	E	-	-	S	E	D	Q	S	V	L	V	N	D	L	E	N	F	K	K	Q	A	N	I	I	V	T	N	R	Y	D	N	E	L	Q	D	V	K	-	-	-	-	N	K	V	Y	S	R	D	I	F	G	R	D	-	-	-	-	-	-	-	-	-	-	-	-	-
V	Q	K	A	F	D	L	I	T	S	-	-	-	-	H	T	K	V	G	L	L	G	L	S	F	K	A	G	T	D	D	L	R	E	S	P	L	V	E	L	A	E	M	L	I	G	K	G	Y	E	L	R	I	F	D	R	N	V	E	Y	A	R	V	H	G	A	N	K	Y	I	E	S	I	P	H	V	S	S	L	L	V	S	D	L	D	E	V	V	A	S	S	D	V	L	V	L	G	N	G	D	-	L	F	V	D	L	V	N	K	T	P	S	G	K	K	L	V	D	L	V	G	F	M	P	H	T	T	T	A	Q	A	E	G	I	C	W