PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d3orsa1  (   1 )     mkVAVIMgsssdwkiMqeSCnmLdyFeIpyekqvVsAhrtpkmMvqfAs
d3rg8a-  (   2 )    rpLVIILMgsssdmgHAekIAseLktFgIeyairigsAhktaehVvsMLk
                       bbbbb  333aaaaaaaaaaaaa    bbbbb      aaaaaaaaa

                             60        70        80        90        100 
d3orsa1  (  50 )    eArer-gInIIIAGaggaAhLPgmVAslttLpVIGVPietkslkGidSll
d3rg8a-  (  52 )    eyealdrpkLYITIagrsNaLSgfVDgfVkgaTIACpppsdsfaga-diy
                    a        bbbbb      aaaaaaaa    bbb            aaa

                             110       120       130       140       150 
d3orsa1  (  99 )    sIvqmpggipVaTtaigaaGAknAGilAArmlsiqnpsLveklnqyessl
d3rg8a-  ( 101 )    sSlrmpsgisPalvl----epknAAllAArifslydkeiadsvksymesn
                    aaa        bb       aaaaaaaaaaaa     aaaaaaaaaaaaa

                             160 
d3orsa1  ( 149 )    iqkvedmqnelq
d3rg8a-  ( 147 )    aqkiieddsk  
                    aaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d3orsa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3orsa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Staphylococcus aureus [TaxId: 426430]		view
d3rg8a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3rg8a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Treponema denticola [TaxId: 158]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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R	P	L	V	I	I	L	M	G	S	S	S	D	M	G	H	A	E	K	I	A	S	E	L	K	T	F	G	I	E	Y	A	I	R	I	G	S	A	H	K	T	A	E	H	V	V	S	M	L	K	E	Y	E	A	L	D	R	P	K	L	Y	I	T	I	A	G	R	S	N	A	L	S	G	F	V	D	G	F	V	K	G	A	T	I	A	C	P	P	P	S	D	S	F	A	G	A	-	D	I	Y	S	S	L	R	M	P	S	G	I	S	P	A	L	V	L	-	-	-	-	E	P	K	N	A	A	L	L	A	A	R	I	F	S	L	Y	D	K	E	I	A	D	S	V	K	S	Y	M	E	S	N	A	Q	K	I	I	E	D	D	S	K	-	-

Member	Chain	UniProtKB	GO term

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R	P	L	V	I	I	L	M	G	S	S	S	D	M	G	H	A	E	K	I	A	S	E	L	K	T	F	G	I	E	Y	A	I	R	I	G	S	A	H	K	T	A	E	H	V	V	S	M	L	K	E	Y	E	A	L	D	R	P	K	L	Y	I	T	I	A	G	R	S	N	A	L	S	G	F	V	D	G	F	V	K	G	A	T	I	A	C	P	P	P	S	D	S	F	A	G	A	-	D	I	Y	S	S	L	R	M	P	S	G	I	S	P	A	L	V	L	-	-	-	-	E	P	K	N	A	A	L	L	A	A	R	I	F	S	L	Y	D	K	E	I	A	D	S	V	K	S	Y	M	E	S	N	A	Q	K	I	I	E	D	D	S	K	-	-

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R	P	L	V	I	I	L	M	G	S	S	S	D	M	G	H	A	E	K	I	A	S	E	L	K	T	F	G	I	E	Y	A	I	R	I	G	S	A	H	K	T	A	E	H	V	V	S	M	L	K	E	Y	E	A	L	D	R	P	K	L	Y	I	T	I	A	G	R	S	N	A	L	S	G	F	V	D	G	F	V	K	G	A	T	I	A	C	P	P	P	S	D	S	F	A	G	A	-	D	I	Y	S	S	L	R	M	P	S	G	I	S	P	A	L	V	L	-	-	-	-	E	P	K	N	A	A	L	L	A	A	R	I	F	S	L	Y	D	K	E	I	A	D	S	V	K	S	Y	M	E	S	N	A	Q	K	I	I	E	D	D	S	K	-	-

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R	P	L	V	I	I	L	M	G	S	S	S	D	M	G	H	A	E	K	I	A	S	E	L	K	T	F	G	I	E	Y	A	I	R	I	G	S	A	H	K	T	A	E	H	V	V	S	M	L	K	E	Y	E	A	L	D	R	P	K	L	Y	I	T	I	A	G	R	S	N	A	L	S	G	F	V	D	G	F	V	K	G	A	T	I	A	C	P	P	P	S	D	S	F	A	G	A	-	D	I	Y	S	S	L	R	M	P	S	G	I	S	P	A	L	V	L	-	-	-	-	E	P	K	N	A	A	L	L	A	A	R	I	F	S	L	Y	D	K	E	I	A	D	S	V	K	S	Y	M	E	S	N	A	Q	K	I	I	E	D	D	S	K	-	-