PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1j3aa-  (   1 )                mrIInAdgLiLgrLAsrVakmLle------------ge
d2j01n1  (   1 )    mktyvpkqveprwvLidaegktlgrlAtkIatlLrGkhrpdwtpnvamgd
                                  bb        aaaaaaaaaa                

                             60        70        80        90        100 
d1j3aa-  (  27 )    eVVIVnAekAVitg---------------------nrevIfskYkqrTyp
d2j01n1  (  51 )    fVVVvnAdkirvtgkkleqkiYtrysgypgglkkipLekMla--------
                      bb                                aaaaaa        

                             110       120       130       140       150 
d1j3aa-  (  69 )    krSdeIVrrtIrgmLpwktdrGrkAfrrLkVyvgipkefqdkqletiveA
d2j01n1  (  93 )    thperVLehaVkgmLp-kgplGrrLfkrLkVyagpdhphQaqrpekl   
                        aaaaaaaa       aaaaaaa   bb                   

                             160       170  
d1j3aa-  ( 119 )    hvsrlsrpkyVtVgeVAkfLggkf
d2j01n1

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1j3aa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1j3aa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Ribosomal protein L13	Ribosomal protein L13	Pyrococcus horikoshii [TaxId: 53953]		view
d2j01n1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2j01n1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Ribosomal protein L13	Ribosomal protein L13	Thermus thermophilus [TaxId: 274]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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M	K	T	Y	V	P	K	Q	V	E	P	R	W	V	L	I	D	A	E	G	K	T	L	G	R	L	A	T	K	I	A	T	L	L	R	G	K	H	R	P	D	W	T	P	N	V	A	M	G	D	F	V	V	V	V	N	A	D	K	I	R	V	T	G	K	K	L	E	Q	K	I	Y	T	R	Y	S	G	Y	P	G	G	L	K	K	I	P	L	E	K	M	L	A	-	-	-	-	-	-	-	-	T	H	P	E	R	V	L	E	H	A	V	K	G	M	L	P	-	K	G	P	L	G	R	R	L	F	K	R	L	K	V	Y	A	G	P	D	H	P	H	Q	A	Q	R	P	E	K	L	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term
d1j3aa_	A	O59300	GO:0003729
d1j3aa_	A	O59300	GO:0003735
d1j3aa_	A	O59300	GO:0005840
d1j3aa_	A	O59300	GO:0006412
d1j3aa_	A	O59300	GO:0015934
d1j3aa_	A	O59300	GO:0017148
d1j3aa_	A	O59300	GO:0022625
d1j3aa_	A	O59300	GO:1990904

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M	K	T	Y	V	P	K	Q	V	E	P	R	W	V	L	I	D	A	E	G	K	T	L	G	R	L	A	T	K	I	A	T	L	L	R	G	K	H	R	P	D	W	T	P	N	V	A	M	G	D	F	V	V	V	V	N	A	D	K	I	R	V	T	G	K	K	L	E	Q	K	I	Y	T	R	Y	S	G	Y	P	G	G	L	K	K	I	P	L	E	K	M	L	A	-	-	-	-	-	-	-	-	T	H	P	E	R	V	L	E	H	A	V	K	G	M	L	P	-	K	G	P	L	G	R	R	L	F	K	R	L	K	V	Y	A	G	P	D	H	P	H	Q	A	Q	R	P	E	K	L	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

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M	K	T	Y	V	P	K	Q	V	E	P	R	W	V	L	I	D	A	E	G	K	T	L	G	R	L	A	T	K	I	A	T	L	L	R	G	K	H	R	P	D	W	T	P	N	V	A	M	G	D	F	V	V	V	V	N	A	D	K	I	R	V	T	G	K	K	L	E	Q	K	I	Y	T	R	Y	S	G	Y	P	G	G	L	K	K	I	P	L	E	K	M	L	A	-	-	-	-	-	-	-	-	T	H	P	E	R	V	L	E	H	A	V	K	G	M	L	P	-	K	G	P	L	G	R	R	L	F	K	R	L	K	V	Y	A	G	P	D	H	P	H	Q	A	Q	R	P	E	K	L	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

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M	K	T	Y	V	P	K	Q	V	E	P	R	W	V	L	I	D	A	E	G	K	T	L	G	R	L	A	T	K	I	A	T	L	L	R	G	K	H	R	P	D	W	T	P	N	V	A	M	G	D	F	V	V	V	V	N	A	D	K	I	R	V	T	G	K	K	L	E	Q	K	I	Y	T	R	Y	S	G	Y	P	G	G	L	K	K	I	P	L	E	K	M	L	A	-	-	-	-	-	-	-	-	T	H	P	E	R	V	L	E	H	A	V	K	G	M	L	P	-	K	G	P	L	G	R	R	L	F	K	R	L	K	V	Y	A	G	P	D	H	P	H	Q	A	Q	R	P	E	K	L	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-