PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1di0a-  (  11 )              tsfkIAFIQArwhadIVdeArksFvaeLaaktg---gsVe
d1kz1a-  (   9 )       npsdlkGpeLrILIVhArgnlqAIepLvkgAvetMiekhdVklen--
d1nqua-  (   1 )    mqiyeGkltAegLrFGIVASrfnhalVdrLvegAidCIvr-hgGreed--
                                  bbbbb    aaaaaaaaaaaaaaaaa          

                             60        70        80        90        100 
d1di0a-  (  48 )    VeifdVpgAyeIplhAktlArtgrYaAIVGAAFvidggiydh-dfvataV
d1kz1a-  (  54 )    IdiesvpgSweLpqgIraSIarntYdAVIGIGVlikg-stmhfeyiseaV
d1nqua-  (  48 )    ItlvrvpgSweIpvaAgeLArkedIdAVIAIGVlirg-atphfdyiaseV
                    bbbbb   333aaaaaaaaa      bbbbbbb          aaaaaaa

                             110       120       130       140       150 
d1di0a-  (  97 )    ingMmqvqletevpVlsVVltphhfheskehhdffhah---Fkv--kGve
d1kz1a-  ( 103 )    vhgLmrvgldsgvpVilGLLtVln-------eeqAlyrAglngGhnhGnd
d1nqua-  (  97 )    skgLanlslelrkPItfGVItAdt-------leqAierAgt-khgnkGwe
                    aaaaaaaaaaa   bbbbbb           aaaaaa         aaaa

                             160     
d1di0a-  ( 139 )    aAhaAlqivsersriaa
d1kz1a-  ( 146 )    wGsaAVemGlkal    
d1nqua-  ( 139 )    AAlsAIemANlfkslr 
                    aaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1di0a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1di0a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Lumazine synthase	Lumazine synthase	Brucella abortus [TaxId: 235]	view
d1kz1a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1kz1a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Lumazine synthase	Lumazine synthase	Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]	view
d1nqua- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1nqua- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Lumazine synthase	Lumazine synthase	Aquifex aeolicus [TaxId: 63363]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1di0a_	A	P61711	GO:0000906
d1di0a_	A	P61711	GO:0005737
d1di0a_	A	P61711	GO:0005829
d1di0a_	A	P61711	GO:0009231
d1di0a_	A	P61711	GO:0009349
d1di0a_	A	P61711	GO:0016740
d1kz1a_	A	Q9UUB1	GO:0000906
d1kz1a_	A	Q9UUB1	GO:0004746
d1kz1a_	A	Q9UUB1	GO:0005515
d1kz1a_	A	Q9UUB1	GO:0005634
d1kz1a_	A	Q9UUB1	GO:0005737
d1kz1a_	A	Q9UUB1	GO:0005758
d1kz1a_	A	Q9UUB1	GO:0009231
d1kz1a_	A	Q9UUB1	GO:0009349
d1kz1a_	A	Q9UUB1	GO:0016740
d1kz1a_	A	Q9UUB1	GO:1902444
d1nqua_	A	O66529	GO:0000906
d1nqua_	A	O66529	GO:0005829
d1nqua_	A	O66529	GO:0009231
d1nqua_	A	O66529	GO:0009349
d1nqua_	A	O66529	GO:0016740

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