PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1h4xa-  (   2 )        afqlemvt---reTVVIrLfgeLdhhaveqIrakIstaIfqgaV-t
d1th8b-  (   2 )      sLaIdlev-k---qdVLIVrLsgeLdhhtAeeLreqVtdvlenraI-r
d1vc1a-  (   1 )    mnnLkLdive-q---ddKAIVrVqgdIdayNsseLkeqLrnfIsttsk-k
d2ooka1  (   2 )    dkkhgLsiginriesvffVtLkAiGtLthedylviTp-LegaLsqvdqpv
d6m37b-  (   2 )      nInVdvkq-n---endIqVnIageIdvySapvLrekLvplAeq--G-a
                        bbbbbb b     bbbbbbbbbb    aaaaaaaaaaaaa      

                             60        70        80        90        100 
d1h4xa-  (  44 )    TIIWnFerLsfMd-sGvgLVlgrmreLeavagrTiLLnPsptMrkvFqfs
d1th8b-  (  45 )    hIVLnLgqLtfMdssGlgVIlgrykqIknvgGqMVVCaVspaVkrlFdms
d1vc1a-  (  46 )    kIVLdLssVsyMdsaGlgtLvvILkdAkingkeFILSsLkesIsriLklt
d2ooka1  (  54 )    sLfLdAteLdGWd---laaWddL-kLgLhseFerVAILgndwq-eWaa--
d6m37b-  (  43 )    dLrIcLkdVsyMdstGlgVFvgTfkmVkkqggsLkLenLserlirlFdit
                     bbbbbbbbbbb   aaaaaaaaaaaaa     bbbb   aaaaaaaaa 

                             110       120    
d1h4xa-  (  94 )    glgpw-----MmdateeeAIdrVr  
d1th8b-  (  95 )    glfkiI----rveadeqfALqaLgVa
d1vc1a-  (  96 )    hldkiF----kitdtveea       
d2ooka1  ( 101 )    kIgsWFiAgeikyfededAlkwLry 
d6m37b-  (  93 )    glkdiI----dIsa            
                      33      bb

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1h4xa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1h4xa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Anti-sigma factor antagonist SpoIIaa	Anti-sigma factor antagonist SpoIIaa	Bacillus sphaericus [TaxId: 1421]	view
d1th8b- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1th8b- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Anti-sigma factor antagonist SpoIIaa	Anti-sigma factor antagonist SpoIIaa	Bacillus stearothermophilus [TaxId: 1422]	view
d1vc1a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1vc1a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Anti-sigma factor antagonist SpoIIaa	Anti-sigma factor antagonist SpoIIaa	Thermotoga maritima [TaxId: 2336]	view
d2ooka1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2ooka1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein Sfri0576	Sfri0576-like	Shewanella frigidimarina [TaxId: 56812]	view
d6m37b- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6m37b- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Bacillus subtilis [TaxId: 224308]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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D	K	K	H	G	L	S	I	G	I	N	R	I	E	S	V	F	F	V	T	L	K	A	I	G	T	L	T	H	E	D	Y	L	V	I	T	P	-	L	E	G	A	L	S	Q	V	D	Q	P	V	S	L	F	L	D	A	T	E	L	D	G	W	D	-	-	-	L	A	A	W	D	D	L	-	K	L	G	L	H	S	E	F	E	R	V	A	I	L	G	N	D	W	Q	-	E	W	A	A	-	-	K	I	G	S	W	F	I	A	G	E	I	K	Y	F	E	D	E	D	A	L	K	W	L	R	Y	-
-	-	N	I	N	V	D	V	K	Q	-	N	-	-	-	E	N	D	I	Q	V	N	I	A	G	E	I	D	V	Y	S	A	P	V	L	R	E	K	L	V	P	L	A	E	Q	-	-	G	-	A	D	L	R	I	C	L	K	D	V	S	Y	M	D	S	T	G	L	G	V	F	V	G	T	F	K	M	V	K	K	Q	G	G	S	L	K	L	E	N	L	S	E	R	L	I	R	L	F	D	I	T	G	L	K	D	I	I	-	-	-	-	D	I	S	A	-	-	-	-	-	-	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term
d1h4xa_	A	O32723	GO:0006355
d1h4xa_	A	O32723	GO:0030435
d1h4xa_	A	O32723	GO:0043856
d1h4xa_	A	O32723	GO:0045152
d1h4xa_	A	O32723	GO:0045893
d1th8b_	B	O32727	GO:0005515
d1th8b_	B	O32727	GO:0030435
d1th8b_	B	O32727	GO:0006355
d1th8b_	B	O32727	GO:0043856
d1th8b_	B	O32727	GO:0045152
d1th8b_	B	O32727	GO:0045893
d1th8b_	B	O32726	GO:0005515
d1th8b_	B	O32726	GO:0030435
d1th8b_	B	O32726	GO:0006355
d1th8b_	B	O32726	GO:0043856
d1th8b_	B	O32726	GO:0045152
d1th8b_	B	O32726	GO:0045893
d1th8b_	B	O32727	GO:0005515
d1th8b_	B	O32727	GO:0030435
d1th8b_	B	O32727	GO:0006355
d1th8b_	B	O32727	GO:0043856
d1th8b_	B	O32727	GO:0045152
d1th8b_	B	O32727	GO:0045893
d1th8b_	B	O32726	GO:0005515
d1th8b_	B	O32726	GO:0030435
d1th8b_	B	O32726	GO:0006355
d1th8b_	B	O32726	GO:0043856
d1th8b_	B	O32726	GO:0045152
d1th8b_	B	O32726	GO:0045893
d1th8b_	B	O32727	GO:0005515
d1th8b_	B	O32727	GO:0030435
d1th8b_	B	O32727	GO:0006355
d1th8b_	B	O32727	GO:0043856
d1th8b_	B	O32727	GO:0045152
d1th8b_	B	O32727	GO:0045893
d1th8b_	B	O32726	GO:0005515
d1th8b_	B	O32726	GO:0030435
d1th8b_	B	O32726	GO:0006355
d1th8b_	B	O32726	GO:0043856
d1th8b_	B	O32726	GO:0045152
d1th8b_	B	O32726	GO:0045893
d1vc1a_	A	Q9X1F5	GO:0006355
d1vc1a_	A	Q9X1F5	GO:0043856
d1vc1a_	A	Q9X1F5	GO:0045893

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M	N	N	L	K	L	D	I	V	E	-	Q	-	-	-	D	D	K	A	I	V	R	V	Q	G	D	I	D	A	Y	N	S	S	E	L	K	E	Q	L	R	N	F	I	S	T	T	S	K	-	K	K	I	V	L	D	L	S	S	V	S	Y	M	D	S	A	G	L	G	T	L	V	V	I	L	K	D	A	K	I	N	G	K	E	F	I	L	S	S	L	K	E	S	I	S	R	I	L	K	L	T	H	L	D	K	I	F	-	-	-	-	K	I	T	D	T	V	E	E	A	-	-	-	-	-	-	-
D	K	K	H	G	L	S	I	G	I	N	R	I	E	S	V	F	F	V	T	L	K	A	I	G	T	L	T	H	E	D	Y	L	V	I	T	P	-	L	E	G	A	L	S	Q	V	D	Q	P	V	S	L	F	L	D	A	T	E	L	D	G	W	D	-	-	-	L	A	A	W	D	D	L	-	K	L	G	L	H	S	E	F	E	R	V	A	I	L	G	N	D	W	Q	-	E	W	A	A	-	-	K	I	G	S	W	F	I	A	G	E	I	K	Y	F	E	D	E	D	A	L	K	W	L	R	Y	-
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-	-	S	L	A	I	D	L	E	V	-	K	-	-	-	Q	D	V	L	I	V	R	L	S	G	E	L	D	H	H	T	A	E	E	L	R	E	Q	V	T	D	V	L	E	N	R	A	I	-	R	H	I	V	L	N	L	G	Q	L	T	F	M	D	S	S	G	L	G	V	I	L	G	R	Y	K	Q	I	K	N	V	G	G	Q	M	V	V	C	A	V	S	P	A	V	K	R	L	F	D	M	S	G	L	F	K	I	I	-	-	-	-	R	V	E	A	D	E	Q	F	A	L	Q	A	L	G	V	A
M	N	N	L	K	L	D	I	V	E	-	Q	-	-	-	D	D	K	A	I	V	R	V	Q	G	D	I	D	A	Y	N	S	S	E	L	K	E	Q	L	R	N	F	I	S	T	T	S	K	-	K	K	I	V	L	D	L	S	S	V	S	Y	M	D	S	A	G	L	G	T	L	V	V	I	L	K	D	A	K	I	N	G	K	E	F	I	L	S	S	L	K	E	S	I	S	R	I	L	K	L	T	H	L	D	K	I	F	-	-	-	-	K	I	T	D	T	V	E	E	A	-	-	-	-	-	-	-
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