PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1r5la2  (  91 )          sIigLLkaGYHGVLrsrDptgSkVLIYrIahWdpk----vftAy
d4uyba2  (  76 )          ppevIqkymPGglC-gyDrdgcPVWYDIigpLdPkGLLfSVtkq
d6slda2  (  95 )    keaedkeriklAkmYpqYYH-hvDkdGrPlyFeelgginlkkMykittek
                            aaaa     bb         bbbbbb              aa

                             60        70        80        90        100 
d1r5la2  ( 131 )    dvfrVsliTseLIvq--eveTqr------nGikAIfdLegWqfsHafqit
d4uyba2  ( 119 )    dLLkTkmrdCerIlh-eCdlQterlgkkIetiVMIfdceglglkHfwkpL
d6slda2  ( 144 )    qMlrnlvkeyelFatyRvpACsrragylietiCivldlkgislsnayh-v
                    aaaaaaaaaaaaa     aaaaa        bbbbbb          a  

                             110       120       130       140       150 
d1r5la2  ( 173 )    psVakkiAavltdsfplkVrGiHlInepvifhavfs-ikpfLtekIkeri
d4uyba2  ( 168 )    veVyqeFfglleenypetlkfMLIVkatklfpvgynlmkpfLsedtrrkI
d6slda2  ( 193 )    lsyikdvAdisqnyypermgkfYiihSpfgFstmFkmvkpfldpvtvski
                    aaaaaaaaaaaa      bbbbbbb      aaa    333  aaaa  b

                             160       170       180       190       200 
d1r5la2  ( 223 )    hh-gnnykqsLlqhFp-diLPleYggeefs---edIcqewtnfiks--ed
d4uyba2  ( 218 )    ivlgnnwk-gLlklIspeeLPaqFgGtltDpdgnpkCltkInyGgeIpks
d6slda2  ( 243 )    filgssYkkellkqipienlPvkYgGtsvlhnpn-dkfyySdiGpWRdpr
                    b         aaaa       333                          

                             210       
d1r5la2  ( 269 )    ylssise            
d4uyba2  ( 268 )    myvrdqv            
d6slda2  ( 292 )    yigpegeipniFgkftvts

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1r5la2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1r5la2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Alpha-tocopherol transfer protein	CRAL/TRIO domain	Human (Homo sapiens) [TaxId: 9606]	view
d4uyba2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4uyba2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Human (Homo sapiens) [TaxId: 9606]	view
d6slda2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6slda2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1r5la2	A	P49638	GO:0001890
d1r5la2	A	P49638	GO:0001892
d1r5la2	A	P49638	GO:0005515
d1r5la2	A	P49638	GO:0005546
d1r5la2	A	P49638	GO:0005737
d1r5la2	A	P49638	GO:0005770
d1r5la2	A	P49638	GO:0005829
d1r5la2	A	P49638	GO:0006629
d1r5la2	A	P49638	GO:0008289
d1r5la2	A	P49638	GO:0008431
d1r5la2	A	P49638	GO:0009636
d1r5la2	A	P49638	GO:0042360
d1r5la2	A	P49638	GO:0043325
d1r5la2	A	P49638	GO:0051180
d1r5la2	A	P49638	GO:0090212
d1r5la2	A	P49638	GO:0120009
d1r5la2	A	P49638	GO:0120013
d1r5la2	A	P49638	GO:1900223
d1r5la2	A	P49638	GO:1902936
d1r5la2	A	P49638	GO:0001890
d1r5la2	A	P49638	GO:0001892
d1r5la2	A	P49638	GO:0005515
d1r5la2	A	P49638	GO:0005546
d1r5la2	A	P49638	GO:0005737
d1r5la2	A	P49638	GO:0005770
d1r5la2	A	P49638	GO:0005829
d1r5la2	A	P49638	GO:0006629
d1r5la2	A	P49638	GO:0008289
d1r5la2	A	P49638	GO:0008431
d1r5la2	A	P49638	GO:0009636
d1r5la2	A	P49638	GO:0042360
d1r5la2	A	P49638	GO:0043325
d1r5la2	A	P49638	GO:0051180
d1r5la2	A	P49638	GO:0090212
d1r5la2	A	P49638	GO:0120009
d1r5la2	A	P49638	GO:0120013
d1r5la2	A	P49638	GO:1900223
d1r5la2	A	P49638	GO:1902936

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-	-	-	-	-	-	S	I	I	G	L	L	K	A	G	Y	H	G	V	L	R	S	R	D	P	T	G	S	K	V	L	I	Y	R	I	A	H	W	D	P	K	-	-	-	-	V	F	T	A	Y	D	V	F	R	V	S	L	I	T	S	E	L	I	V	Q	-	-	E	V	E	T	Q	R	-	-	-	-	-	-	N	G	I	K	A	I	F	D	L	E	G	W	Q	F	S	H	A	F	Q	I	T	P	S	V	A	K	K	I	A	A	V	L	T	D	S	F	P	L	K	V	R	G	I	H	L	I	N	E	P	V	I	F	H	A	V	F	S	-	I	K	P	F	L	T	E	K	I	K	E	R	I	H	H	-	G	N	N	Y	K	Q	S	L	L	Q	H	F	P	-	D	I	L	P	L	E	Y	G	G	E	E	F	S	-	-	-	E	D	I	C	Q	E	W	T	N	F	I	K	S	-	-	E	D	Y	L	S	S	I	S	E	-	-	-	-	-	-	-	-	-	-	-	-
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