PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1iq8a1  (   6 )    kmLkFeikardGAGRIGkLeVngkkieTPaIMPvVnPkqm-vVePkeLek
d3blda-  (  12 )    prFsFsiaaregkARtgtIeMkrgvIrTPAfMPvGtaatVkaLkpetVra
                       bbbbbbbb  bbbbbbbb  bbbbb bb             aaaaaa

                             60        70        80        90        100 
d1iq8a1  (  55 )    mgfeIIITnSyiIykdeelrrkAlelgIhrmLdYngIIEVdSGsfqlmky
d3blda-  (  62 )    TgADIILgnTyhLmlr-pgAerIalggLHsfmgWdrPILTdSGgfqseeG
                         bbb aaaaaa    aaaa    aaaaa     bbb          

                             110       120       130       140       150 
d1iq8a1  ( 105 )    gsIeVsNreIIeFQhrIgVdIGtFLDipTppdapreqAvkeLeiTLsrAr
d3blda-  ( 122 )    vtfsLsPerSIeIQhlLgSdIVMAFde-Tpypatps-AassMerSmrWAk
                          aaaaaaaaaa                      aaaaaaaaaaaa

                             160       170       180       190       200 
d1iq8a1  ( 155 )    eAeeiKe------iPMNATIQGStytdLRryAArrLssmnFeIHPIGGVv
d3blda-  ( 181 )    rSrdaFdsrQaenAALFGIQQGsvfenlRqqSAdaL-aigFdGYAVGgLa
                    aaaaa                    aaaaaaaaaaa       bbb    

                             210       220       230       240       250 
d1iq8a1  ( 199 )    pLlesyrFrdVVdIVISSkmaLrpdrPVHLfgAGhPIVFAlAVAMGVDLF
d3blda-  ( 233 )    g---gEgqdeMfrVLdfSVpmLpddkPHYLmgVg-PddIVGAVergIDMF
                           aaaaaaaaaaa         bbb        aaaaa     bb

                             260       270       280       290       300 
d1iq8a1  ( 249 )    DSasYalyAkddrYMtpegtkrLdeld--------yFpcscpVCskytPq
d3blda-  ( 280 )    d-----------GAfTwdgpinIrnarFsedlkpLDseChcaVC-kwsra
                                                                    aa

                             310       320       330       340       350 
d1iq8a1  ( 291 )    eLremp---keertrLLAlHNLwVIkeEikrVkqaIkegeLwrLVderAr
d3blda-  ( 330 )    yIhhLirageilGamLmteHniAFyQqLMqkIrdSIsegrF-qfadFrar
                    aa        aaaaaaaaaaaaaaaaaaaaaaaaaaa         aaa 

                             360       370 
d1iq8a1  ( 338 )    ShpkLysAykrLlehytfleefe
d3blda-  ( 381 )    Yf

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1iq8a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1iq8a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Archaeosine tRNA-guanine transglycosylase, N-terminal domain	tRNA-guanine transglycosylase	Pyrococcus horikoshii [TaxId: 53953]		view
d3blda- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3blda- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Queosine tRNA-guanine transglycosylase	tRNA-guanine transglycosylase	Zymomonas mobilis [TaxId: 542]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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P	R	F	S	F	S	I	A	A	R	E	G	K	A	R	T	G	T	I	E	M	K	R	G	V	I	R	T	P	A	F	M	P	V	G	T	A	A	T	V	K	A	L	K	P	E	T	V	R	A	T	G	A	D	I	I	L	G	N	T	Y	H	L	M	L	R	-	P	G	A	E	R	I	A	L	G	G	L	H	S	F	M	G	W	D	R	P	I	L	T	D	S	G	G	F	Q	S	E	E	G	V	T	F	S	L	S	P	E	R	S	I	E	I	Q	H	L	L	G	S	D	I	V	M	A	F	D	E	-	T	P	Y	P	A	T	P	S	-	A	A	S	S	M	E	R	S	M	R	W	A	K	R	S	R	D	A	F	D	S	R	Q	A	E	N	A	A	L	F	G	I	Q	Q	G	S	V	F	E	N	L	R	Q	Q	S	A	D	A	L	-	A	I	G	F	D	G	Y	A	V	G	G	L	A	G	-	-	-	G	E	G	Q	D	E	M	F	R	V	L	D	F	S	V	P	M	L	P	D	D	K	P	H	Y	L	M	G	V	G	-	P	D	D	I	V	G	A	V	E	R	G	I	D	M	F	D	-	-	-	-	-	-	-	-	-	-	-	G	A	F	T	W	D	G	P	I	N	I	R	N	A	R	F	S	E	D	L	K	P	L	D	S	E	C	H	C	A	V	C	-	K	W	S	R	A	Y	I	H	H	L	I	R	A	G	E	I	L	G	A	M	L	M	T	E	H	N	I	A	F	Y	Q	Q	L	M	Q	K	I	R	D	S	I	S	E	G	R	F	-	Q	F	A	D	F	R	A	R	Y	F	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term
d1iq8a1	A	O58843	GO:0002099
d1iq8a1	A	O58843	GO:0003723
d1iq8a1	A	O58843	GO:0005737
d1iq8a1	A	O58843	GO:0006400
d1iq8a1	A	O58843	GO:0008033
d1iq8a1	A	O58843	GO:0008270
d1iq8a1	A	O58843	GO:0008616
d1iq8a1	A	O58843	GO:0016757
d1iq8a1	A	O58843	GO:0016763
d1iq8a1	A	O58843	GO:0046872
d1iq8a1	A	O58843	GO:0002099
d1iq8a1	A	O58843	GO:0003723
d1iq8a1	A	O58843	GO:0005737
d1iq8a1	A	O58843	GO:0006400
d1iq8a1	A	O58843	GO:0008033
d1iq8a1	A	O58843	GO:0008270
d1iq8a1	A	O58843	GO:0008616
d1iq8a1	A	O58843	GO:0016757
d1iq8a1	A	O58843	GO:0016763
d1iq8a1	A	O58843	GO:0046872

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P	R	F	S	F	S	I	A	A	R	E	G	K	A	R	T	G	T	I	E	M	K	R	G	V	I	R	T	P	A	F	M	P	V	G	T	A	A	T	V	K	A	L	K	P	E	T	V	R	A	T	G	A	D	I	I	L	G	N	T	Y	H	L	M	L	R	-	P	G	A	E	R	I	A	L	G	G	L	H	S	F	M	G	W	D	R	P	I	L	T	D	S	G	G	F	Q	S	E	E	G	V	T	F	S	L	S	P	E	R	S	I	E	I	Q	H	L	L	G	S	D	I	V	M	A	F	D	E	-	T	P	Y	P	A	T	P	S	-	A	A	S	S	M	E	R	S	M	R	W	A	K	R	S	R	D	A	F	D	S	R	Q	A	E	N	A	A	L	F	G	I	Q	Q	G	S	V	F	E	N	L	R	Q	Q	S	A	D	A	L	-	A	I	G	F	D	G	Y	A	V	G	G	L	A	G	-	-	-	G	E	G	Q	D	E	M	F	R	V	L	D	F	S	V	P	M	L	P	D	D	K	P	H	Y	L	M	G	V	G	-	P	D	D	I	V	G	A	V	E	R	G	I	D	M	F	D	-	-	-	-	-	-	-	-	-	-	-	G	A	F	T	W	D	G	P	I	N	I	R	N	A	R	F	S	E	D	L	K	P	L	D	S	E	C	H	C	A	V	C	-	K	W	S	R	A	Y	I	H	H	L	I	R	A	G	E	I	L	G	A	M	L	M	T	E	H	N	I	A	F	Y	Q	Q	L	M	Q	K	I	R	D	S	I	S	E	G	R	F	-	Q	F	A	D	F	R	A	R	Y	F	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

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P	R	F	S	F	S	I	A	A	R	E	G	K	A	R	T	G	T	I	E	M	K	R	G	V	I	R	T	P	A	F	M	P	V	G	T	A	A	T	V	K	A	L	K	P	E	T	V	R	A	T	G	A	D	I	I	L	G	N	T	Y	H	L	M	L	R	-	P	G	A	E	R	I	A	L	G	G	L	H	S	F	M	G	W	D	R	P	I	L	T	D	S	G	G	F	Q	S	E	E	G	V	T	F	S	L	S	P	E	R	S	I	E	I	Q	H	L	L	G	S	D	I	V	M	A	F	D	E	-	T	P	Y	P	A	T	P	S	-	A	A	S	S	M	E	R	S	M	R	W	A	K	R	S	R	D	A	F	D	S	R	Q	A	E	N	A	A	L	F	G	I	Q	Q	G	S	V	F	E	N	L	R	Q	Q	S	A	D	A	L	-	A	I	G	F	D	G	Y	A	V	G	G	L	A	G	-	-	-	G	E	G	Q	D	E	M	F	R	V	L	D	F	S	V	P	M	L	P	D	D	K	P	H	Y	L	M	G	V	G	-	P	D	D	I	V	G	A	V	E	R	G	I	D	M	F	D	-	-	-	-	-	-	-	-	-	-	-	G	A	F	T	W	D	G	P	I	N	I	R	N	A	R	F	S	E	D	L	K	P	L	D	S	E	C	H	C	A	V	C	-	K	W	S	R	A	Y	I	H	H	L	I	R	A	G	E	I	L	G	A	M	L	M	T	E	H	N	I	A	F	Y	Q	Q	L	M	Q	K	I	R	D	S	I	S	E	G	R	F	-	Q	F	A	D	F	R	A	R	Y	F	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

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K	M	L	K	F	E	I	K	A	R	D	G	A	G	R	I	G	K	L	E	V	N	G	K	K	I	E	T	P	A	I	M	P	V	V	N	P	K	Q	M	-	V	V	E	P	K	E	L	E	K	M	G	F	E	I	I	I	T	N	S	Y	I	I	Y	K	D	E	E	L	R	R	K	A	L	E	L	G	I	H	R	M	L	D	Y	N	G	I	I	E	V	D	S	G	S	F	Q	L	M	K	Y	G	S	I	E	V	S	N	R	E	I	I	E	F	Q	H	R	I	G	V	D	I	G	T	F	L	D	I	P	T	P	P	D	A	P	R	E	Q	A	V	K	E	L	E	I	T	L	S	R	A	R	E	A	E	E	I	K	E	-	-	-	-	-	-	I	P	M	N	A	T	I	Q	G	S	T	Y	T	D	L	R	R	Y	A	A	R	R	L	S	S	M	N	F	E	I	H	P	I	G	G	V	V	P	L	L	E	S	Y	R	F	R	D	V	V	D	I	V	I	S	S	K	M	A	L	R	P	D	R	P	V	H	L	F	G	A	G	H	P	I	V	F	A	L	A	V	A	M	G	V	D	L	F	D	S	A	S	Y	A	L	Y	A	K	D	D	R	Y	M	T	P	E	G	T	K	R	L	D	E	L	D	-	-	-	-	-	-	-	-	Y	F	P	C	S	C	P	V	C	S	K	Y	T	P	Q	E	L	R	E	M	P	-	-	-	K	E	E	R	T	R	L	L	A	L	H	N	L	W	V	I	K	E	E	I	K	R	V	K	Q	A	I	K	E	G	E	L	W	R	L	V	D	E	R	A	R	S	H	P	K	L	Y	S	A	Y	K	R	L	L	E	H	Y	T	F	L	E	E	F	E
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