PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1xi3a-  (   2 )           nlrn--LLYVITdrrl----pEvsVe-ALeggAtAIQMrI---
d2tpsa1  (  14 )    mtrisremMkelLsVYFIMGsnnTkadpvtVVqkALkGgAtLYQFrEkgg
d3o63a1  (   1 )        mhesrLasArLYLcTdARrergdlaqFAeaALaGgVDIIQLrdkgs
                                   bbb                       bbbb     

                             60        70        80        90        100 
d1xi3a-  (  41 )    -------nAptremyeiGt-LrqlTrey-alFFVddrVdVAlavdAdGVq
d2tpsa1  (  64 )    ------dAltgearikfAekAqaaCreagvpFIVnddveLAlnlkAdGIh
d3o63a1  (  47 )    pGelrfgpLqardelaaCeiLadAAhrygALFAVndrAdIAraAgAdVLH
                              aaaaaaa   aaaaaaa    bbbb  aaaaaaa   bbb

                             110       120       130       140       150 
d1xi3a-  (  84 )    Lgp-dmpievAkeiAp-nLiIGAsVysleeAl-aekkgAdYLgAGsVfpt
d2tpsa1  ( 108 )    IgqedanakeVraaIg-dmiLGVsAhtmseVkqAeeDgAdYVgLGPIypt
d3o63a1  (  97 )    LgqrdlpvnvArqiLapdTLIGrsThdpdqVaaaaagdAdYFCVGpCwpt
                    b      aaaaaaa     bbbbbb  aaaa         bbbb      

                             160       170       180       190       200 
d1xi3a-  ( 137 )    d-----arviglegLrkIve--sVipVVAiggInkdnA-rVLktgVdGIA
d2tpsa1  ( 157 )    etkkdtravqgvslIeaVrrqgisIPIVGiggItidnAapVIqagAdGVS
d3o63a1  ( 147 )    p------tapglgLVrvAae--ldkpwFAiggInaqrLpaVldAgArrIV
                                aaaaaaa       bbbb                  bb

                             210       220       
d1xi3a-  ( 181 )    VisaVMgad---vaTeeLr-iveevlg  
d2tpsa1  ( 207 )    MisaISqaedpesaArkFreeIqtyktgr
d3o63a1  ( 197 )    VvraItsaddpraaAeqLrsaLtaa    
                    b aaaa        aaaa   aa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1xi3a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1xi3a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Thiamin phosphate synthase	Thiamin phosphate synthase	Pyrococcus furiosus [TaxId: 2261]	view
d2tpsa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2tpsa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Thiamin phosphate synthase	Thiamin phosphate synthase	Bacillus subtilis [TaxId: 1423]	view
d3o63a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3o63a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Mycobacterium tuberculosis [TaxId: 1773]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1xi3a_	A	Q8U192	GO:0000287
d1xi3a_	A	Q8U192	GO:0004789
d1xi3a_	A	Q8U192	GO:0005737
d1xi3a_	A	Q8U192	GO:0009228
d1xi3a_	A	Q8U192	GO:0009229
d1xi3a_	A	Q8U192	GO:0016740
d1xi3a_	A	Q8U192	GO:0046872
d1xi3a_	A	Q8U192	GO:0000287
d1xi3a_	A	Q8U192	GO:0004789
d1xi3a_	A	Q8U192	GO:0005737
d1xi3a_	A	Q8U192	GO:0009228
d1xi3a_	A	Q8U192	GO:0009229
d1xi3a_	A	Q8U192	GO:0016740
d1xi3a_	A	Q8U192	GO:0046872

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