PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1aqta2  (   2 )    styhLdVvSaeqqMfsglVekIqVtGsegelgIypghaplltaIkpgmIr
d2hldh1  (  12 )        lqFa-phetlys--vtqVnLpa--grigvlanhvptv-qL-pg-Ve
d2jdih2  (  17 )       sftfasptqvffn----qvdvptL-rpglVvvfVssgsqllAeeAvt
                          bb                                          

                             60        70        80    
d1aqta2  (  52 )    IvkqhgheefIyLsggiLeVqpgnVtVlAdtAirg
d2hldh1  (  60 )    me--gs---nffIsggfatVqpdsLcVtAiea   
d2jdih2  ( 100 )    l

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1aqta2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1aqta2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Epsilon subunit of F1F0-ATP synthase N-terminal domain	Epsilon subunit of F1F0-ATP synthase N-terminal domain	Escherichia coli [TaxId: 562]	view
d2hldh1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2hldh1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Epsilon subunit of F1F0-ATP synthase N-terminal domain	Epsilon subunit of F1F0-ATP synthase N-terminal domain	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]	view
d2jdih2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2jdih2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Epsilon subunit of F1F0-ATP synthase N-terminal domain	Epsilon subunit of F1F0-ATP synthase N-terminal domain	Cow (Bos taurus) [TaxId: 9913]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1aqta2	A	P0A6E6	GO:0005515
d1aqta2	A	P0A6E6	GO:0005524
d1aqta2	A	P0A6E6	GO:0005886
d1aqta2	A	P0A6E6	GO:0006754
d1aqta2	A	P0A6E6	GO:0015986
d1aqta2	A	P0A6E6	GO:0042777
d1aqta2	A	P0A6E6	GO:0045259
d1aqta2	A	P0A6E6	GO:0045261
d1aqta2	A	P0A6E6	GO:0046933
d1aqta2	A	P0A6E6	GO:1902600
d2jdih2	H	P19483	GO:0015986
d2jdih2	H	P19483	GO:0045261
d2jdih2	H	P19483	GO:0046933
d2jdih2	H	P00829	GO:0015986
d2jdih2	H	P00829	GO:0045261
d2jdih2	H	P00829	GO:0046933
d2jdih2	H	P05631	GO:0015986
d2jdih2	H	P05631	GO:0045261
d2jdih2	H	P05631	GO:0046933
d2jdih2	H	P05630	GO:0015986
d2jdih2	H	P05630	GO:0045261
d2jdih2	H	P05630	GO:0046933
d2jdih2	H	P05632	GO:0015986
d2jdih2	H	P05632	GO:0045261
d2jdih2	H	P05632	GO:0046933
d2jdih2	H	P19483	GO:0015986
d2jdih2	H	P19483	GO:0045261
d2jdih2	H	P19483	GO:0046933
d2jdih2	H	P00829	GO:0015986
d2jdih2	H	P00829	GO:0045261
d2jdih2	H	P00829	GO:0046933
d2jdih2	H	P05631	GO:0015986
d2jdih2	H	P05631	GO:0045261
d2jdih2	H	P05631	GO:0046933
d2jdih2	H	P05630	GO:0015986
d2jdih2	H	P05630	GO:0045261
d2jdih2	H	P05630	GO:0046933
d2jdih2	H	P05632	GO:0015986
d2jdih2	H	P05632	GO:0045261
d2jdih2	H	P05632	GO:0046933
d2jdih2	H	P19483	GO:0015986
d2jdih2	H	P19483	GO:0045261
d2jdih2	H	P19483	GO:0046933
d2jdih2	H	P00829	GO:0015986
d2jdih2	H	P00829	GO:0045261
d2jdih2	H	P00829	GO:0046933
d2jdih2	H	P05631	GO:0015986
d2jdih2	H	P05631	GO:0045261
d2jdih2	H	P05631	GO:0046933
d2jdih2	H	P05630	GO:0015986
d2jdih2	H	P05630	GO:0045261
d2jdih2	H	P05630	GO:0046933
d2jdih2	H	P05632	GO:0015986
d2jdih2	H	P05632	GO:0045261
d2jdih2	H	P05632	GO:0046933
d2jdih2	H	P19483	GO:0015986
d2jdih2	H	P19483	GO:0045261
d2jdih2	H	P19483	GO:0046933
d2jdih2	H	P00829	GO:0015986
d2jdih2	H	P00829	GO:0045261
d2jdih2	H	P00829	GO:0046933
d2jdih2	H	P05631	GO:0015986
d2jdih2	H	P05631	GO:0045261
d2jdih2	H	P05631	GO:0046933
d2jdih2	H	P05630	GO:0015986
d2jdih2	H	P05630	GO:0045261
d2jdih2	H	P05630	GO:0046933
d2jdih2	H	P05632	GO:0015986
d2jdih2	H	P05632	GO:0045261
d2jdih2	H	P05632	GO:0046933
d2jdih2	H	P19483	GO:0015986
d2jdih2	H	P19483	GO:0045261
d2jdih2	H	P19483	GO:0046933
d2jdih2	H	P00829	GO:0015986
d2jdih2	H	P00829	GO:0045261
d2jdih2	H	P00829	GO:0046933
d2jdih2	H	P05631	GO:0015986
d2jdih2	H	P05631	GO:0045261
d2jdih2	H	P05631	GO:0046933
d2jdih2	H	P05630	GO:0015986
d2jdih2	H	P05630	GO:0045261
d2jdih2	H	P05630	GO:0046933
d2jdih2	H	P05632	GO:0015986
d2jdih2	H	P05632	GO:0045261
d2jdih2	H	P05632	GO:0046933

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