PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2jzka-  (   1 )      m-SYadsSrnAvltn--gGrtlrAeCrnadgnwvtseldldtciGnpn
d2jzla-  (   1 )    msfhv---taedArievrdnrtilfArlrredgewndasyeldqiiGnnd
d2l2fa-  (   1 )      mGnFhesSnniwle---dGhilhAeCgngegdyvestldldyyigndd
d2yhha-  (   1 )      mpnFshtÇssinYdp--dstilsaeçqardgewlptelrlsdhiGnid
d3czza-  (   1 )      lGkFsqtÇynsaIq----gsvLtStÇertnggyntssidLnsvIaAvd
                             bbbbbbb      bbbbbbb     bbbbbbb333  bb  

                             60        70        80        90        100 
d2jzka-  (  46 )    GflgwgmqnFshSSedikle-e----gGrkltCrPktvdggfrerqgidl
d2jzla-  (  48 )    GhFqwggqnFtetAedirFhpkegaaeqpilrArlrdcng-efhdrdvnl
d2l2fa-  (  46 )    GsFswggenFsgsAsnitld-iegddniPvlrAelnPmdg-dpveAnvnl
d2yhha-  (  47 )    GelqfgdqnFqetÇqdÇrle-fgdgeqsvwlvÇtÇqtmdg-ewkstqill
d3czza-  (  45 )    GsLkwqgsnFieaÇrnTqla-g-----sseLaAeÇktaag-qfvstkinL
                      bb      33 bbbbbbb         bbbbbb        bbbbb  

                             110   
d2jzka-  (  91 )    n-riqnvnGrlvfq 
d2jzla-  (  97 )    teivenvngefqakf
d2l2fa-  (  94 )    SerigndcGtlifla
d2yhha-  (  95 )    dsqidnndsqleig 
d3czza-  (  88 )    ddhIaNidGtLkye 
                       bbb    bbb

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d2jzka- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2jzka- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Tuber borchii [TaxId: 42251]	view
d2jzla- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2jzla- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Fungus (Neurospora crassa) [TaxId: 5141]	view
d2l2fa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2l2fa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Fusarium graminearum (Gibberella zeae) [TaxId: 5518]	view
d2yhha- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2yhha- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Microcystis aeruginosa [TaxId: 1126]	view
d3czza- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3czza- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Cyanovirin-N	Nostoc ellipsosporum [TaxId: 45916]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	-	M	-	S	Y	A	D	S	S	R	N	A	V	L	T	N	-	-	G	G	R	T	L	R	A	E	C	R	N	A	D	G	N	W	V	T	S	E	L	D	L	D	T	C	I	G	N	P	N	G	F	L	G	W	G	M	Q	N	F	S	H	S	S	E	D	I	K	L	E	-	E	-	-	-	-	G	G	R	K	L	T	C	R	P	K	T	V	D	G	G	F	R	E	R	Q	G	I	D	L	N	-	R	I	Q	N	V	N	G	R	L	V	F	Q	-
M	S	F	H	V	-	-	-	T	A	E	D	A	R	I	E	V	R	D	N	R	T	I	L	F	A	R	L	R	R	E	D	G	E	W	N	D	A	S	Y	E	L	D	Q	I	I	G	N	N	D	G	H	F	Q	W	G	G	Q	N	F	T	E	T	A	E	D	I	R	F	H	P	K	E	G	A	A	E	Q	P	I	L	R	A	R	L	R	D	C	N	G	-	E	F	H	D	R	D	V	N	L	T	E	I	V	E	N	V	N	G	E	F	Q	A	K	F
-	-	M	G	N	F	H	E	S	S	N	N	I	W	L	E	-	-	-	D	G	H	I	L	H	A	E	C	G	N	G	E	G	D	Y	V	E	S	T	L	D	L	D	Y	Y	I	G	N	D	D	G	S	F	S	W	G	G	E	N	F	S	G	S	A	S	N	I	T	L	D	-	I	E	G	D	D	N	I	P	V	L	R	A	E	L	N	P	M	D	G	-	D	P	V	E	A	N	V	N	L	S	E	R	I	G	N	D	C	G	T	L	I	F	L	A
-	-	M	P	N	F	S	H	T	C	S	S	I	N	Y	D	P	-	-	D	S	T	I	L	S	A	E	C	Q	A	R	D	G	E	W	L	P	T	E	L	R	L	S	D	H	I	G	N	I	D	G	E	L	Q	F	G	D	Q	N	F	Q	E	T	C	Q	D	C	R	L	E	-	F	G	D	G	E	Q	S	V	W	L	V	C	T	C	Q	T	M	D	G	-	E	W	K	S	T	Q	I	L	L	D	S	Q	I	D	N	N	D	S	Q	L	E	I	G	-
-	-	L	G	K	F	S	Q	T	C	Y	N	S	A	I	Q	-	-	-	-	G	S	V	L	T	S	T	C	E	R	T	N	G	G	Y	N	T	S	S	I	D	L	N	S	V	I	A	A	V	D	G	S	L	K	W	Q	G	S	N	F	I	E	A	C	R	N	T	Q	L	A	-	G	-	-	-	-	-	S	S	E	L	A	A	E	C	K	T	A	A	G	-	Q	F	V	S	T	K	I	N	L	D	D	H	I	A	N	I	D	G	T	L	K	Y	E	-

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70										80										90										100										110
-	-	M	-	S	Y	A	D	S	S	R	N	A	V	L	T	N	-	-	G	G	R	T	L	R	A	E	C	R	N	A	D	G	N	W	V	T	S	E	L	D	L	D	T	C	I	G	N	P	N	G	F	L	G	W	G	M	Q	N	F	S	H	S	S	E	D	I	K	L	E	-	E	-	-	-	-	G	G	R	K	L	T	C	R	P	K	T	V	D	G	G	F	R	E	R	Q	G	I	D	L	N	-	R	I	Q	N	V	N	G	R	L	V	F	Q	-
M	S	F	H	V	-	-	-	T	A	E	D	A	R	I	E	V	R	D	N	R	T	I	L	F	A	R	L	R	R	E	D	G	E	W	N	D	A	S	Y	E	L	D	Q	I	I	G	N	N	D	G	H	F	Q	W	G	G	Q	N	F	T	E	T	A	E	D	I	R	F	H	P	K	E	G	A	A	E	Q	P	I	L	R	A	R	L	R	D	C	N	G	-	E	F	H	D	R	D	V	N	L	T	E	I	V	E	N	V	N	G	E	F	Q	A	K	F
-	-	M	G	N	F	H	E	S	S	N	N	I	W	L	E	-	-	-	D	G	H	I	L	H	A	E	C	G	N	G	E	G	D	Y	V	E	S	T	L	D	L	D	Y	Y	I	G	N	D	D	G	S	F	S	W	G	G	E	N	F	S	G	S	A	S	N	I	T	L	D	-	I	E	G	D	D	N	I	P	V	L	R	A	E	L	N	P	M	D	G	-	D	P	V	E	A	N	V	N	L	S	E	R	I	G	N	D	C	G	T	L	I	F	L	A
-	-	M	P	N	F	S	H	T	C	S	S	I	N	Y	D	P	-	-	D	S	T	I	L	S	A	E	C	Q	A	R	D	G	E	W	L	P	T	E	L	R	L	S	D	H	I	G	N	I	D	G	E	L	Q	F	G	D	Q	N	F	Q	E	T	C	Q	D	C	R	L	E	-	F	G	D	G	E	Q	S	V	W	L	V	C	T	C	Q	T	M	D	G	-	E	W	K	S	T	Q	I	L	L	D	S	Q	I	D	N	N	D	S	Q	L	E	I	G	-
-	-	L	G	K	F	S	Q	T	C	Y	N	S	A	I	Q	-	-	-	-	G	S	V	L	T	S	T	C	E	R	T	N	G	G	Y	N	T	S	S	I	D	L	N	S	V	I	A	A	V	D	G	S	L	K	W	Q	G	S	N	F	I	E	A	C	R	N	T	Q	L	A	-	G	-	-	-	-	-	S	S	E	L	A	A	E	C	K	T	A	A	G	-	Q	F	V	S	T	K	I	N	L	D	D	H	I	A	N	I	D	G	T	L	K	Y	E	-

									10										20										30										40										50										60										70										80										90										100										110
-	-	M	-	S	Y	A	D	S	S	R	N	A	V	L	T	N	-	-	G	G	R	T	L	R	A	E	C	R	N	A	D	G	N	W	V	T	S	E	L	D	L	D	T	C	I	G	N	P	N	G	F	L	G	W	G	M	Q	N	F	S	H	S	S	E	D	I	K	L	E	-	E	-	-	-	-	G	G	R	K	L	T	C	R	P	K	T	V	D	G	G	F	R	E	R	Q	G	I	D	L	N	-	R	I	Q	N	V	N	G	R	L	V	F	Q	-
M	S	F	H	V	-	-	-	T	A	E	D	A	R	I	E	V	R	D	N	R	T	I	L	F	A	R	L	R	R	E	D	G	E	W	N	D	A	S	Y	E	L	D	Q	I	I	G	N	N	D	G	H	F	Q	W	G	G	Q	N	F	T	E	T	A	E	D	I	R	F	H	P	K	E	G	A	A	E	Q	P	I	L	R	A	R	L	R	D	C	N	G	-	E	F	H	D	R	D	V	N	L	T	E	I	V	E	N	V	N	G	E	F	Q	A	K	F
-	-	M	G	N	F	H	E	S	S	N	N	I	W	L	E	-	-	-	D	G	H	I	L	H	A	E	C	G	N	G	E	G	D	Y	V	E	S	T	L	D	L	D	Y	Y	I	G	N	D	D	G	S	F	S	W	G	G	E	N	F	S	G	S	A	S	N	I	T	L	D	-	I	E	G	D	D	N	I	P	V	L	R	A	E	L	N	P	M	D	G	-	D	P	V	E	A	N	V	N	L	S	E	R	I	G	N	D	C	G	T	L	I	F	L	A
-	-	M	P	N	F	S	H	T	C	S	S	I	N	Y	D	P	-	-	D	S	T	I	L	S	A	E	C	Q	A	R	D	G	E	W	L	P	T	E	L	R	L	S	D	H	I	G	N	I	D	G	E	L	Q	F	G	D	Q	N	F	Q	E	T	C	Q	D	C	R	L	E	-	F	G	D	G	E	Q	S	V	W	L	V	C	T	C	Q	T	M	D	G	-	E	W	K	S	T	Q	I	L	L	D	S	Q	I	D	N	N	D	S	Q	L	E	I	G	-
-	-	L	G	K	F	S	Q	T	C	Y	N	S	A	I	Q	-	-	-	-	G	S	V	L	T	S	T	C	E	R	T	N	G	G	Y	N	T	S	S	I	D	L	N	S	V	I	A	A	V	D	G	S	L	K	W	Q	G	S	N	F	I	E	A	C	R	N	T	Q	L	A	-	G	-	-	-	-	-	S	S	E	L	A	A	E	C	K	T	A	A	G	-	Q	F	V	S	T	K	I	N	L	D	D	H	I	A	N	I	D	G	T	L	K	Y	E	-

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-	-	M	-	S	Y	A	D	S	S	R	N	A	V	L	T	N	-	-	G	G	R	T	L	R	A	E	C	R	N	A	D	G	N	W	V	T	S	E	L	D	L	D	T	C	I	G	N	P	N	G	F	L	G	W	G	M	Q	N	F	S	H	S	S	E	D	I	K	L	E	-	E	-	-	-	-	G	G	R	K	L	T	C	R	P	K	T	V	D	G	G	F	R	E	R	Q	G	I	D	L	N	-	R	I	Q	N	V	N	G	R	L	V	F	Q	-
M	S	F	H	V	-	-	-	T	A	E	D	A	R	I	E	V	R	D	N	R	T	I	L	F	A	R	L	R	R	E	D	G	E	W	N	D	A	S	Y	E	L	D	Q	I	I	G	N	N	D	G	H	F	Q	W	G	G	Q	N	F	T	E	T	A	E	D	I	R	F	H	P	K	E	G	A	A	E	Q	P	I	L	R	A	R	L	R	D	C	N	G	-	E	F	H	D	R	D	V	N	L	T	E	I	V	E	N	V	N	G	E	F	Q	A	K	F
-	-	M	G	N	F	H	E	S	S	N	N	I	W	L	E	-	-	-	D	G	H	I	L	H	A	E	C	G	N	G	E	G	D	Y	V	E	S	T	L	D	L	D	Y	Y	I	G	N	D	D	G	S	F	S	W	G	G	E	N	F	S	G	S	A	S	N	I	T	L	D	-	I	E	G	D	D	N	I	P	V	L	R	A	E	L	N	P	M	D	G	-	D	P	V	E	A	N	V	N	L	S	E	R	I	G	N	D	C	G	T	L	I	F	L	A
-	-	M	P	N	F	S	H	T	C	S	S	I	N	Y	D	P	-	-	D	S	T	I	L	S	A	E	C	Q	A	R	D	G	E	W	L	P	T	E	L	R	L	S	D	H	I	G	N	I	D	G	E	L	Q	F	G	D	Q	N	F	Q	E	T	C	Q	D	C	R	L	E	-	F	G	D	G	E	Q	S	V	W	L	V	C	T	C	Q	T	M	D	G	-	E	W	K	S	T	Q	I	L	L	D	S	Q	I	D	N	N	D	S	Q	L	E	I	G	-
-	-	L	G	K	F	S	Q	T	C	Y	N	S	A	I	Q	-	-	-	-	G	S	V	L	T	S	T	C	E	R	T	N	G	G	Y	N	T	S	S	I	D	L	N	S	V	I	A	A	V	D	G	S	L	K	W	Q	G	S	N	F	I	E	A	C	R	N	T	Q	L	A	-	G	-	-	-	-	-	S	S	E	L	A	A	E	C	K	T	A	A	G	-	Q	F	V	S	T	K	I	N	L	D	D	H	I	A	N	I	D	G	T	L	K	Y	E	-