PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1glaf-  (   1 )                                      gfdlslv-tieIiAPL
d1gpra-  (   4 )                                      eplqneigeevfVSPI
d1qwya-  (  45 )    vsygtyytidsngdyHHTpdgnwnqamfdnkeysYtFvdaqghtHyFYn-
                                                                      

                             60        70        80        90        100 
d1glaf-  (  27 )    sgeIvnIedVpd---vvfaekivgdGIAIkPt----------gnkMVAPV
d1gpra-  (  20 )    tgeIhpItdVpd---qvfsgkmmgdGFAIlPs----------eGiVvSPV
d1qwya-  (  94 )    -cyPknAnangsgqtyVnpatagDnNDYTaSQsqqhinqygYqsnvGpDa
                                                                      

                             110       120       130       140       150 
d1glaf-  (  64 )    d---------------gtIgkIfe------tnHAFsIeSdsgVeLfVhFG
d1gpra-  (  57 )    r---------------GkIlnvfp------tkHAIgLqSdggreIlIhFG
d1qwya-  ( 143 )    syyssghAkdaswLtsrkqlqpygqYhgggaHyGVDYaMpenspVySLTd
                                      bbb             bbbb     bbb    

                             160       170       180       190       200 
d1glaf-  (  93 )    idTveLkgeGFkriAeegqrV-vgdtVIeFdlplLeekA-stlTPVVIsn
d1gpra-  (  86 )    IdTvslkgegFtsfVsegdrVepGqkLLeVdldaVkpnVpslmTPIVFtn
d1qwya-  ( 229 )    ----------gtVvqAgWsnyGGGNqVTIkea-------nsnnYQWYMHN
                              bbb            bbbbb               bbb  

                             210       220       230       240       250 
d1glaf-  ( 143 )    mdeIkeLik-lsgsVtvgetpVIrIkk                       
d1gpra-  ( 136 )    laegetVsikasgsVnreqedIVkie                        
d1qwya-  ( 262 )    n----rLtvsagdkVkag-dqIAySGstGnStapHVHFQrMsgGIGNqyA
                         bb      bb       bb                          

                            
d1glaf-                     
d1gpra-                     
d1qwya-  ( 307 )    vdPtsYLq

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1glaf- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1glaf- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Glucose-specific factor III (glsIII)	Glucose permease-like	Escherichia coli [TaxId: 562]	view
d1gpra- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1gpra- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Glucose permease IIa domain, IIa-glc	Glucose permease-like	Bacillus subtilis [TaxId: 1423]	view
d1qwya- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1qwya- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Peptidoglycan hydrolase LytM	Peptidoglycan hydrolase LytM	Staphylococcus aureus [TaxId: 1280]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1glaf_	F	P69783	GO:0005515
d1glaf_	F	P69783	GO:0005737
d1glaf_	F	P69783	GO:0005829
d1glaf_	F	P69783	GO:0009401
d1glaf_	F	P69783	GO:0009898
d1glaf_	F	P69783	GO:0016020
d1glaf_	F	P69783	GO:0016301
d1glaf_	F	P69783	GO:0016310
d1glaf_	F	P69783	GO:0034763
d1glaf_	F	P69783	GO:0043610
d1glaf_	F	P69783	GO:0045912
d1glaf_	F	P69783	GO:0046872
d1glaf_	F	P69783	GO:1902344
d1glaf_	F	P69783	GO:1902495
d1glaf_	F	P69783	GO:1990154
d1glaf_	F	P0A6F3	GO:0005515
d1glaf_	F	P0A6F3	GO:0005737
d1glaf_	F	P0A6F3	GO:0005829
d1glaf_	F	P0A6F3	GO:0009401
d1glaf_	F	P0A6F3	GO:0009898
d1glaf_	F	P0A6F3	GO:0016020
d1glaf_	F	P0A6F3	GO:0016301
d1glaf_	F	P0A6F3	GO:0016310
d1glaf_	F	P0A6F3	GO:0034763
d1glaf_	F	P0A6F3	GO:0043610
d1glaf_	F	P0A6F3	GO:0045912
d1glaf_	F	P0A6F3	GO:0046872
d1glaf_	F	P0A6F3	GO:1902344
d1glaf_	F	P0A6F3	GO:1902495
d1glaf_	F	P0A6F3	GO:1990154
d1gpra_	A	Q59250	GO:0005737
d1gpra_	A	Q59250	GO:0009401
d1gpra_	A	Q59250	GO:0016301
d1gpra_	A	Q59250	GO:0016310
d1qwya_	A	O33599	GO:0004222
d1qwya_	A	O33599	GO:0005576
d1qwya_	A	O33599	GO:0006508
d1qwya_	A	O33599	GO:0008237
d1qwya_	A	O33599	GO:0008270
d1qwya_	A	O33599	GO:0016151
d1qwya_	A	O33599	GO:0030145
d1qwya_	A	O33599	GO:0043171
d1qwya_	A	O33599	GO:0046872
d1qwya_	A	O33599	GO:0050897
d1qwya_	A	O33599	GO:0071555

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V	S	Y	G	T	Y	Y	T	I	D	S	N	G	D	Y	H	H	T	P	D	G	N	W	N	Q	A	M	F	D	N	K	E	Y	S	Y	T	F	V	D	A	Q	G	H	T	H	Y	F	Y	N	-	-	C	Y	P	K	N	A	N	A	N	G	S	G	Q	T	Y	V	N	P	A	T	A	G	D	N	N	D	Y	T	A	S	Q	S	Q	Q	H	I	N	Q	Y	G	Y	Q	S	N	V	G	P	D	A	S	Y	Y	S	S	G	H	A	K	D	A	S	W	L	T	S	R	K	Q	L	Q	P	Y	G	Q	Y	H	G	G	G	A	H	Y	G	V	D	Y	A	M	P	E	N	S	P	V	Y	S	L	T	D	-	-	-	-	-	-	-	-	-	-	G	T	V	V	Q	A	G	W	S	N	Y	G	G	G	N	Q	V	T	I	K	E	A	-	-	-	-	-	-	-	N	S	N	N	Y	Q	W	Y	M	H	N	N	-	-	-	-	R	L	T	V	S	A	G	D	K	V	K	A	G	-	D	Q	I	A	Y	S	G	S	T	G	N	S	T	A	P	H	V	H	F	Q	R	M	S	G	G	I	G	N	Q	Y	A	V	D	P	T	S	Y	L	Q

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