PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1v1ha1  ( 319 )    vsikkssglnfdntaiainagkglefdtntseSpdinpiktkigsgidyn
d2oj5b1  ( 293 )                                                      
                                                                      

                             60        70     
d1v1ha1  ( 369 )    engamitklgaglsfdnsgaitig  
d2oj5b1  ( 293 )         spnlrypiadvs-ggigmspn
                                 bb     bb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1v1ha1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1v1ha1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Adenovirus	Adenovirus	Human adenovirus type 2 [TaxId: 10515]		view
d2oj5b1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2oj5b1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Reovirus sp. [TaxId: 10891]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70
V	S	I	K	K	S	S	G	L	N	F	D	N	T	A	I	A	I	N	A	G	K	G	L	E	F	D	T	N	T	S	E	S	P	D	I	N	P	I	K	T	K	I	G	S	G	I	D	Y	N	E	N	G	A	M	I	T	K	L	G	A	G	L	S	F	D	N	S	G	A	I	T	I	G	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	S	P	N	L	R	Y	P	I	A	D	V	S	-	G	G	I	G	M	S	P	N

Member	Chain	UniProtKB	GO term
d1v1ha1	A	P03275	GO:0019062
d1v1ha1	A	P10104	GO:0019062

									10										20										30										40										50										60										70
V	S	I	K	K	S	S	G	L	N	F	D	N	T	A	I	A	I	N	A	G	K	G	L	E	F	D	T	N	T	S	E	S	P	D	I	N	P	I	K	T	K	I	G	S	G	I	D	Y	N	E	N	G	A	M	I	T	K	L	G	A	G	L	S	F	D	N	S	G	A	I	T	I	G	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	S	P	N	L	R	Y	P	I	A	D	V	S	-	G	G	I	G	M	S	P	N

									10										20										30										40										50										60										70
V	S	I	K	K	S	S	G	L	N	F	D	N	T	A	I	A	I	N	A	G	K	G	L	E	F	D	T	N	T	S	E	S	P	D	I	N	P	I	K	T	K	I	G	S	G	I	D	Y	N	E	N	G	A	M	I	T	K	L	G	A	G	L	S	F	D	N	S	G	A	I	T	I	G	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	S	P	N	L	R	Y	P	I	A	D	V	S	-	G	G	I	G	M	S	P	N

									10										20										30										40										50										60										70
V	S	I	K	K	S	S	G	L	N	F	D	N	T	A	I	A	I	N	A	G	K	G	L	E	F	D	T	N	T	S	E	S	P	D	I	N	P	I	K	T	K	I	G	S	G	I	D	Y	N	E	N	G	A	M	I	T	K	L	G	A	G	L	S	F	D	N	S	G	A	I	T	I	G	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	S	P	N	L	R	Y	P	I	A	D	V	S	-	G	G	I	G	M	S	P	N