PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1pg6a-  (   5 )    r-rftidqnqfplVeIdLehggsVyLqqgSvyhtenVtlntklnglgklv
d1yoxa1  (   5 )    eLdyril-gesqtVeIeLdpgetViAeagAny-tgdIrfta---------
d3zzsa-  (   7 )                                                      
                                                                      

                             60        70        80        90        100 
d1pg6a-  (  61 )    gAigrsvsgesfitqASng--dGkLALapntp-gqIvaleLg---ekQYr
d1yoxa1  (  47 )    -----------rthftNegqgkqhvAFaApYp-GsVvavd-LddvggrLf
d3zzsa-  (   7 )                         sdfvvIkAledgVnVigltrga-------
                                           bbbb        bbbbb          

                             110       120       130       140       150 
d1pg6a-  ( 108 )    lndgafLALdGsAqykerqniggglfVtTeglgtLLANSfgsikkitldg
d1yoxa1  ( 112 )    CqkdSfLCAAygTrvgiae---gfiLqkLegdglVFVHAGgtlirrqLng
d3zzsa-  (  29 )    -------------------dtrfhhsekLdkgevliaqfte---------
                                                b    bbbbb            

                             160       170       180       190       200 
d1pg6a-  ( 167 )    gt-tidNahVVAWSreLdydIhlengfqsigtgegvvNtFrghgeIyiqs
d1yoxa1  ( 171 )    etlrvdtgcLVAFtdgIdydvqlag---------lllTtLkgsgtVWlQs
d3zzsa-  (  51 )    ---------------------------------htsaIkvrgkAyiqtrh
                                                        bbbbb  bbbbb  

                             210       220 
d1pg6a-  ( 218 )    -lnleqfagtlkryl        
d1yoxa1  ( 223 )    -lPfsrlagriydatfrareevr
d3zzsa-  (  68 )    gvie

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1pg6a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1pg6a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein SPyM3_0169 (SPyM18_0222, SPS0176)	PA3696/SPS0176-like	Streptococcus pyogenes [TaxId: 1314]	view
d1yoxa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1yoxa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein PA3696	PA3696/SPS0176-like	Pseudomonas aeruginosa [TaxId: 287]	view
d3zzsa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3zzsa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Trp RNA-binding attenuation protein (TRAP)	Geobacillus stearothermophilus [TaxId: 1422]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term

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E	L	D	Y	R	I	L	-	G	E	S	Q	T	V	E	I	E	L	D	P	G	E	T	V	I	A	E	A	G	A	N	Y	-	T	G	D	I	R	F	T	A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	R	T	H	F	T	N	E	G	Q	G	K	Q	H	V	A	F	A	A	P	Y	P	-	G	S	V	V	A	V	D	-	L	D	D	V	G	G	R	L	F	C	Q	K	D	S	F	L	C	A	A	Y	G	T	R	V	G	I	A	E	-	-	-	G	F	I	L	Q	K	L	E	G	D	G	L	V	F	V	H	A	G	G	T	L	I	R	R	Q	L	N	G	E	T	L	R	V	D	T	G	C	L	V	A	F	T	D	G	I	D	Y	D	V	Q	L	A	G	-	-	-	-	-	-	-	-	-	L	L	L	T	T	L	K	G	S	G	T	V	W	L	Q	S	-	L	P	F	S	R	L	A	G	R	I	Y	D	A	T	F	R	A	R	E	E	V	R
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R	-	R	F	T	I	D	Q	N	Q	F	P	L	V	E	I	D	L	E	H	G	G	S	V	Y	L	Q	Q	G	S	V	Y	H	T	E	N	V	T	L	N	T	K	L	N	G	L	G	K	L	V	G	A	I	G	R	S	V	S	G	E	S	F	I	T	Q	A	S	N	G	-	-	D	G	K	L	A	L	A	P	N	T	P	-	G	Q	I	V	A	L	E	L	G	-	-	-	E	K	Q	Y	R	L	N	D	G	A	F	L	A	L	D	G	S	A	Q	Y	K	E	R	Q	N	I	G	G	G	L	F	V	T	T	E	G	L	G	T	L	L	A	N	S	F	G	S	I	K	K	I	T	L	D	G	G	T	-	T	I	D	N	A	H	V	V	A	W	S	R	E	L	D	Y	D	I	H	L	E	N	G	F	Q	S	I	G	T	G	E	G	V	V	N	T	F	R	G	H	G	E	I	Y	I	Q	S	-	L	N	L	E	Q	F	A	G	T	L	K	R	Y	L	-	-	-	-	-	-	-	-
E	L	D	Y	R	I	L	-	G	E	S	Q	T	V	E	I	E	L	D	P	G	E	T	V	I	A	E	A	G	A	N	Y	-	T	G	D	I	R	F	T	A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	R	T	H	F	T	N	E	G	Q	G	K	Q	H	V	A	F	A	A	P	Y	P	-	G	S	V	V	A	V	D	-	L	D	D	V	G	G	R	L	F	C	Q	K	D	S	F	L	C	A	A	Y	G	T	R	V	G	I	A	E	-	-	-	G	F	I	L	Q	K	L	E	G	D	G	L	V	F	V	H	A	G	G	T	L	I	R	R	Q	L	N	G	E	T	L	R	V	D	T	G	C	L	V	A	F	T	D	G	I	D	Y	D	V	Q	L	A	G	-	-	-	-	-	-	-	-	-	L	L	L	T	T	L	K	G	S	G	T	V	W	L	Q	S	-	L	P	F	S	R	L	A	G	R	I	Y	D	A	T	F	R	A	R	E	E	V	R
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E	L	D	Y	R	I	L	-	G	E	S	Q	T	V	E	I	E	L	D	P	G	E	T	V	I	A	E	A	G	A	N	Y	-	T	G	D	I	R	F	T	A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	R	T	H	F	T	N	E	G	Q	G	K	Q	H	V	A	F	A	A	P	Y	P	-	G	S	V	V	A	V	D	-	L	D	D	V	G	G	R	L	F	C	Q	K	D	S	F	L	C	A	A	Y	G	T	R	V	G	I	A	E	-	-	-	G	F	I	L	Q	K	L	E	G	D	G	L	V	F	V	H	A	G	G	T	L	I	R	R	Q	L	N	G	E	T	L	R	V	D	T	G	C	L	V	A	F	T	D	G	I	D	Y	D	V	Q	L	A	G	-	-	-	-	-	-	-	-	-	L	L	L	T	T	L	K	G	S	G	T	V	W	L	Q	S	-	L	P	F	S	R	L	A	G	R	I	Y	D	A	T	F	R	A	R	E	E	V	R
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