PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1ei5a1  ( 338 )    srvAdaWfgsWlDdetglvLsLeda-ggMkArF-gt----spemMdVvsa
d1ei5a2  ( 418 )    vgAkhdIiGrYhSdeldadLlLvseggaIyGAfegflgksdmypLysvGs
                            bbbb      bbbbb      bbb          bb bbbb 

                             60        70        80        90        
d1ei5a1  ( 386 )    neArsa-----------vTtIrrdg---etIeLvrasenlrLsMr    
d1ei5a2  ( 470 )    dvWlLpvqrsmdapspgewkLvFrrdgItgLsVgCw-largveyrrvqp
                     bbb               bbbbb     bbbbbb    bbbbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1ei5a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1ei5a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	D-aminopeptidase, middle and C-terminal domains	D-aminopeptidase, middle and C-terminal domains	Ochrobactrum anthropi [TaxId: 529]		view
d1ei5a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1ei5a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	D-aminopeptidase, middle and C-terminal domains	D-aminopeptidase, middle and C-terminal domains	Ochrobactrum anthropi [TaxId: 529]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90
S	R	V	A	D	A	W	F	G	S	W	L	D	D	E	T	G	L	V	L	S	L	E	D	A	-	G	G	M	K	A	R	F	-	G	T	-	-	-	-	S	P	E	M	M	D	V	V	S	A	N	E	A	R	S	A	-	-	-	-	-	-	-	-	-	-	-	V	T	T	I	R	R	D	G	-	-	-	E	T	I	E	L	V	R	A	S	E	N	L	R	L	S	M	R	-	-	-	-
V	G	A	K	H	D	I	I	G	R	Y	H	S	D	E	L	D	A	D	L	L	L	V	S	E	G	G	A	I	Y	G	A	F	E	G	F	L	G	K	S	D	M	Y	P	L	Y	S	V	G	S	D	V	W	L	L	P	V	Q	R	S	M	D	A	P	S	P	G	E	W	K	L	V	F	R	R	D	G	I	T	G	L	S	V	G	C	W	-	L	A	R	G	V	E	Y	R	R	V	Q	P

Member	Chain	UniProtKB	GO term
d1ei5a1	A	Q9ZBA9	GO:0004177
d1ei5a1	A	Q9ZBA9	GO:0006508
d1ei5a1	A	Q9ZBA9	GO:0004177
d1ei5a1	A	Q9ZBA9	GO:0006508
d1ei5a1	A	Q9ZBA9	GO:0004177
d1ei5a1	A	Q9ZBA9	GO:0006508
d1ei5a1	A	Q9ZBA9	GO:0004177
d1ei5a1	A	Q9ZBA9	GO:0006508
d1ei5a1	A	Q9ZBA9	GO:0004177
d1ei5a1	A	Q9ZBA9	GO:0006508
d1ei5a2	A	Q9ZBA9	GO:0004177
d1ei5a2	A	Q9ZBA9	GO:0006508
d1ei5a2	A	Q9ZBA9	GO:0004177
d1ei5a2	A	Q9ZBA9	GO:0006508
d1ei5a2	A	Q9ZBA9	GO:0004177
d1ei5a2	A	Q9ZBA9	GO:0006508
d1ei5a2	A	Q9ZBA9	GO:0004177
d1ei5a2	A	Q9ZBA9	GO:0006508
d1ei5a2	A	Q9ZBA9	GO:0004177
d1ei5a2	A	Q9ZBA9	GO:0006508

									10										20										30										40										50										60										70										80										90
S	R	V	A	D	A	W	F	G	S	W	L	D	D	E	T	G	L	V	L	S	L	E	D	A	-	G	G	M	K	A	R	F	-	G	T	-	-	-	-	S	P	E	M	M	D	V	V	S	A	N	E	A	R	S	A	-	-	-	-	-	-	-	-	-	-	-	V	T	T	I	R	R	D	G	-	-	-	E	T	I	E	L	V	R	A	S	E	N	L	R	L	S	M	R	-	-	-	-
V	G	A	K	H	D	I	I	G	R	Y	H	S	D	E	L	D	A	D	L	L	L	V	S	E	G	G	A	I	Y	G	A	F	E	G	F	L	G	K	S	D	M	Y	P	L	Y	S	V	G	S	D	V	W	L	L	P	V	Q	R	S	M	D	A	P	S	P	G	E	W	K	L	V	F	R	R	D	G	I	T	G	L	S	V	G	C	W	-	L	A	R	G	V	E	Y	R	R	V	Q	P

									10										20										30										40										50										60										70										80										90
S	R	V	A	D	A	W	F	G	S	W	L	D	D	E	T	G	L	V	L	S	L	E	D	A	-	G	G	M	K	A	R	F	-	G	T	-	-	-	-	S	P	E	M	M	D	V	V	S	A	N	E	A	R	S	A	-	-	-	-	-	-	-	-	-	-	-	V	T	T	I	R	R	D	G	-	-	-	E	T	I	E	L	V	R	A	S	E	N	L	R	L	S	M	R	-	-	-	-
V	G	A	K	H	D	I	I	G	R	Y	H	S	D	E	L	D	A	D	L	L	L	V	S	E	G	G	A	I	Y	G	A	F	E	G	F	L	G	K	S	D	M	Y	P	L	Y	S	V	G	S	D	V	W	L	L	P	V	Q	R	S	M	D	A	P	S	P	G	E	W	K	L	V	F	R	R	D	G	I	T	G	L	S	V	G	C	W	-	L	A	R	G	V	E	Y	R	R	V	Q	P

									10										20										30										40										50										60										70										80										90
S	R	V	A	D	A	W	F	G	S	W	L	D	D	E	T	G	L	V	L	S	L	E	D	A	-	G	G	M	K	A	R	F	-	G	T	-	-	-	-	S	P	E	M	M	D	V	V	S	A	N	E	A	R	S	A	-	-	-	-	-	-	-	-	-	-	-	V	T	T	I	R	R	D	G	-	-	-	E	T	I	E	L	V	R	A	S	E	N	L	R	L	S	M	R	-	-	-	-
V	G	A	K	H	D	I	I	G	R	Y	H	S	D	E	L	D	A	D	L	L	L	V	S	E	G	G	A	I	Y	G	A	F	E	G	F	L	G	K	S	D	M	Y	P	L	Y	S	V	G	S	D	V	W	L	L	P	V	Q	R	S	M	D	A	P	S	P	G	E	W	K	L	V	F	R	R	D	G	I	T	G	L	S	V	G	C	W	-	L	A	R	G	V	E	Y	R	R	V	Q	P