PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1e0ta1  (  70 )                                              peIrTmkL
d1o65a1  (   4 )    flvereqmrypVdVytgakiqvdg--elmLtelgLegdeqa---------
d1orua-  (   2 )       wkrtakAeGLYiAdtksfvTkqdkldFdygGIpgDlhfgltkkAgar
d2g50a1  ( 116 )                                              peIrTGlI
d3hqna2  (  88 )                                               eIrTgqF
                                                                      

                             60        70        80        90        100 
d1e0ta1  (  78 )    egg--ndvsL-agqtFtFTtdksv--------------iGns-emVAVty
d1o65a1  (  60 )    --------hggpdrALcHYPrehylyWarefpeqaelFvApaFgENLSTd
d1orua-  (  51 )    epfsrgteifNr-rQIsIVSieECneIAlk---gVprIlpeWLgANVAvs
d2g50a1  ( 124 )    kgsgtaeVeLkkgatLkITldnayme------------kCde-niLWLdY
d3hqna2  (  95 )    vg---gdavMergatCyVTTdpafad------------kGtk-dkFyIdY
                            bb     bbbb                           b   

                             110       120       130       140       150 
d1e0ta1  ( 111 )    egFttdLsvgntVlVddglIgMeVtai-eg--------------------
d1o65a1  ( 102 )    gLtesnVyMGDiFrWge--AlIqVSqPrsPcyklNyhF-----disdIAq
d1orua-  (  99 )    gpdlTslkegSrIiFpsg-AaLlCegeNdPciqpGevIqsyypdqpklas
d2g50a1  ( 161 )    knIckvVdvgskVyVddglISLqVkqk-gp--------------------
d3hqna2  ( 129 )    qnLskvVrpgnyIyIddgiLiLqVqshede--------------------
                               bbbb    bbbbbbbb                       

                             160       170       180       190       200 
d1e0ta1  ( 140 )    ---------nkViCkVlnngdLgenkgVnLpgvsial             
d1o65a1  ( 145 )    lMQnt--gkVGWlYsViapgkVsadapLeLvsrvsdVtVqeAAaIAWhmp
d1orua-  ( 149 )    aFvrhAlgiRGIVCiVerpgaVytgdeIevhsyq                
d2g50a1  ( 190 )    ---------dfLvTeVenggfLgskkgVnLpgaavdl             
d3hqna2  ( 159 )    ---------qTLeCtVtnshtIsdrrgVnLpgCdvdl             
                               bbbbb   bbb     bb                     

                             210       220       230       240 
d1e0ta1                                                      
d1o65a1  ( 193 )    fdddqYhrLlsAagLSkswtrtMqkRrlsgkiedfsrrLwg
d1orua-                                                      
d2g50a1                                                      
d3hqna2

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1e0ta1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1e0ta1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Pyruvate kinase (PK)	Pyruvate kinase beta-barrel domain	Escherichia coli [TaxId: 562]	view
d1o65a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1o65a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein YiiM	MOSC (MOCO sulphurase C-terminal) domain	Escherichia coli [TaxId: 562]	view
d1orua- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1orua- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein YuaD	MOSC (MOCO sulphurase C-terminal) domain	Bacillus subtilis [TaxId: 1423]	view
d2g50a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2g50a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Pyruvate kinase (PK)	Pyruvate kinase beta-barrel domain	Rabbit (Oryctolagus cuniculus) [TaxId: 9986]	view
d3hqna2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3hqna2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Pyruvate kinase (PK)	Pyruvate kinase beta-barrel domain	Trypanosome (Leishmania mexicana) [TaxId: 5665]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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F	L	V	E	R	E	Q	M	R	Y	P	V	D	V	Y	T	G	A	K	I	Q	V	D	G	-	-	E	L	M	L	T	E	L	G	L	E	G	D	E	Q	A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	H	G	G	P	D	R	A	L	C	H	Y	P	R	E	H	Y	L	Y	W	A	R	E	F	P	E	Q	A	E	L	F	V	A	P	A	F	G	E	N	L	S	T	D	G	L	T	E	S	N	V	Y	M	G	D	I	F	R	W	G	E	-	-	A	L	I	Q	V	S	Q	P	R	S	P	C	Y	K	L	N	Y	H	F	-	-	-	-	-	D	I	S	D	I	A	Q	L	M	Q	N	T	-	-	G	K	V	G	W	L	Y	S	V	I	A	P	G	K	V	S	A	D	A	P	L	E	L	V	S	R	V	S	D	V	T	V	Q	E	A	A	A	I	A	W	H	M	P	F	D	D	D	Q	Y	H	R	L	L	S	A	A	G	L	S	K	S	W	T	R	T	M	Q	K	R	R	L	S	G	K	I	E	D	F	S	R	R	L	W	G
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Member	Chain	UniProtKB	GO term
d1e0ta1	A	P0AD61	GO:0000287
d1e0ta1	A	P0AD61	GO:0003824
d1e0ta1	A	P0AD61	GO:0004743
d1e0ta1	A	P0AD61	GO:0005515
d1e0ta1	A	P0AD61	GO:0005524
d1e0ta1	A	P0AD61	GO:0005737
d1e0ta1	A	P0AD61	GO:0005829
d1e0ta1	A	P0AD61	GO:0006096
d1e0ta1	A	P0AD61	GO:0009408
d1e0ta1	A	P0AD61	GO:0016020
d1e0ta1	A	P0AD61	GO:0016301
d1e0ta1	A	P0AD61	GO:0016310
d1e0ta1	A	P0AD61	GO:0030955
d1e0ta1	A	P0AD61	GO:0042802
d1e0ta1	A	P0AD61	GO:0046872
d1e0ta1	A	P0AD61	GO:1902912
d1e0ta1	A	P0AD61	GO:0000287
d1e0ta1	A	P0AD61	GO:0003824
d1e0ta1	A	P0AD61	GO:0004743
d1e0ta1	A	P0AD61	GO:0005515
d1e0ta1	A	P0AD61	GO:0005524
d1e0ta1	A	P0AD61	GO:0005737
d1e0ta1	A	P0AD61	GO:0005829
d1e0ta1	A	P0AD61	GO:0006096
d1e0ta1	A	P0AD61	GO:0009408
d1e0ta1	A	P0AD61	GO:0016020
d1e0ta1	A	P0AD61	GO:0016301
d1e0ta1	A	P0AD61	GO:0016310
d1e0ta1	A	P0AD61	GO:0030955
d1e0ta1	A	P0AD61	GO:0042802
d1e0ta1	A	P0AD61	GO:0046872
d1e0ta1	A	P0AD61	GO:1902912
d1e0ta1	A	P0AD61	GO:0000287
d1e0ta1	A	P0AD61	GO:0003824
d1e0ta1	A	P0AD61	GO:0004743
d1e0ta1	A	P0AD61	GO:0005515
d1e0ta1	A	P0AD61	GO:0005524
d1e0ta1	A	P0AD61	GO:0005737
d1e0ta1	A	P0AD61	GO:0005829
d1e0ta1	A	P0AD61	GO:0006096
d1e0ta1	A	P0AD61	GO:0009408
d1e0ta1	A	P0AD61	GO:0016020
d1e0ta1	A	P0AD61	GO:0016301
d1e0ta1	A	P0AD61	GO:0016310
d1e0ta1	A	P0AD61	GO:0030955
d1e0ta1	A	P0AD61	GO:0042802
d1e0ta1	A	P0AD61	GO:0046872
d1e0ta1	A	P0AD61	GO:1902912
d1orua_	A	O32079	GO:0003824
d1orua_	A	O32079	GO:0030151
d1orua_	A	O32079	GO:0030170
d2g50a1	A	P11974	GO:0000287
d2g50a1	A	P11974	GO:0003729
d2g50a1	A	P11974	GO:0003824
d2g50a1	A	P11974	GO:0004713
d2g50a1	A	P11974	GO:0004743
d2g50a1	A	P11974	GO:0005515
d2g50a1	A	P11974	GO:0005524
d2g50a1	A	P11974	GO:0005634
d2g50a1	A	P11974	GO:0005737
d2g50a1	A	P11974	GO:0005791
d2g50a1	A	P11974	GO:0006096
d2g50a1	A	P11974	GO:0006417
d2g50a1	A	P11974	GO:0016301
d2g50a1	A	P11974	GO:0016310
d2g50a1	A	P11974	GO:0030955
d2g50a1	A	P11974	GO:0032869
d2g50a1	A	P11974	GO:0046872
d2g50a1	A	P11974	GO:1903672
d2g50a1	A	P11974	GO:2000767
d2g50a1	A	P11974	GO:0000287
d2g50a1	A	P11974	GO:0003729
d2g50a1	A	P11974	GO:0003824
d2g50a1	A	P11974	GO:0004713
d2g50a1	A	P11974	GO:0004743
d2g50a1	A	P11974	GO:0005515
d2g50a1	A	P11974	GO:0005524
d2g50a1	A	P11974	GO:0005634
d2g50a1	A	P11974	GO:0005737
d2g50a1	A	P11974	GO:0005791
d2g50a1	A	P11974	GO:0006096
d2g50a1	A	P11974	GO:0006417
d2g50a1	A	P11974	GO:0016301
d2g50a1	A	P11974	GO:0016310
d2g50a1	A	P11974	GO:0030955
d2g50a1	A	P11974	GO:0032869
d2g50a1	A	P11974	GO:0046872
d2g50a1	A	P11974	GO:1903672
d2g50a1	A	P11974	GO:2000767
d2g50a1	A	P11974	GO:0000287
d2g50a1	A	P11974	GO:0003729
d2g50a1	A	P11974	GO:0003824
d2g50a1	A	P11974	GO:0004713
d2g50a1	A	P11974	GO:0004743
d2g50a1	A	P11974	GO:0005515
d2g50a1	A	P11974	GO:0005524
d2g50a1	A	P11974	GO:0005634
d2g50a1	A	P11974	GO:0005737
d2g50a1	A	P11974	GO:0005791
d2g50a1	A	P11974	GO:0006096
d2g50a1	A	P11974	GO:0006417
d2g50a1	A	P11974	GO:0016301
d2g50a1	A	P11974	GO:0016310
d2g50a1	A	P11974	GO:0030955
d2g50a1	A	P11974	GO:0032869
d2g50a1	A	P11974	GO:0046872
d2g50a1	A	P11974	GO:1903672
d2g50a1	A	P11974	GO:2000767

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160										170										180										190										200										210										220										230										240
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	P	E	I	R	T	M	K	L	E	G	G	-	-	N	D	V	S	L	-	A	G	Q	T	F	T	F	T	T	D	K	S	V	-	-	-	-	-	-	-	-	-	-	-	-	-	-	I	G	N	S	-	E	M	V	A	V	T	Y	E	G	F	T	T	D	L	S	V	G	N	T	V	L	V	D	D	G	L	I	G	M	E	V	T	A	I	-	E	G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	N	K	V	I	C	K	V	L	N	N	G	D	L	G	E	N	K	G	V	N	L	P	G	V	S	I	A	L	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
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									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160										170										180										190										200										210										220										230										240
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-	-	-	W	K	R	T	A	K	A	E	G	L	Y	I	A	D	T	K	S	F	V	T	K	Q	D	K	L	D	F	D	Y	G	G	I	P	G	D	L	H	F	G	L	T	K	K	A	G	A	R	E	P	F	S	R	G	T	E	I	F	N	R	-	R	Q	I	S	I	V	S	I	E	E	C	N	E	I	A	L	K	-	-	-	G	V	P	R	I	L	P	E	W	L	G	A	N	V	A	V	S	G	P	D	L	T	S	L	K	E	G	S	R	I	I	F	P	S	G	-	A	A	L	L	C	E	G	E	N	D	P	C	I	Q	P	G	E	V	I	Q	S	Y	Y	P	D	Q	P	K	L	A	S	A	F	V	R	H	A	L	G	I	R	G	I	V	C	I	V	E	R	P	G	A	V	Y	T	G	D	E	I	E	V	H	S	Y	Q	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
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									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160										170										180										190										200										210										220										230										240
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