PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1ffya2  ( 201 )    hdkrSAsIyVAFnVkddkGvvdadAkfIIwtttpwtipSnVaITvhpe--
d1h3na2  ( 226 )       rseGAeIlFpVeg------kevrIpVFttrPDTLfGAtFLVLAPehp
d1wkaa-  ( 195 )        gklyTLrYeVeg----g---gfIeIAtvrPETVFADqAIAVhpeDe
d1wnya-  ( 202 )        dpsVyVrFpLkepkklgLekASLLIwtttPwtLPGNVAAAVhpeyt
                         bbbbbbbb            bbbbbb  333333  bbbb     

                             60        70        80        90        100 
d1ffya2  ( 249 )    ---lkyGqYnvngekYiiaeaLsdaVaeaLdwdka-----siklekeytg
d1h3na2  ( 267 )    lTleLAa---pek------reeVlayveaAkrkteierqaegrektGvf-
d1wkaa-  ( 234 )    ------------------------------------------------ry
d1wnya-  ( 248 )    ----YAAFqvgd-eALILEeglGrkllge-----------gtpvlktfpG
                                           aaaa                       

                             110       120       130       140       150 
d1ffya2  ( 291 )    kelewvvAqHpfldr--esLvINgdhvttda-gTgcvHtAPghgeddyiv
d1h3na2  ( 307 )    ---LgayAlNpAt---gerIpIwTAdyVlfgygtGAiMAVPAHdqrDYeF
d1wkaa-  ( 236 )    rhllgkrArIPlt---evwIpIlaDpaVekdfgtGAlkVTPahdpldyeI
d1wnya-  ( 282 )    kaLeglpYtPPYpqaLekGyfVVladyVsqedgTGIvHQAPafgaedlet
                                         bbb            bbb     aaaaaa

                             160       170       180       190       200 
d1ffya2  ( 338 )    gqqyelpvISpidd---------------kgvfte--eggqfegmfydkA
d1h3na2  ( 351 )    ArkfglpikkVIerpgepLpeplerAyeepgiMvn---SgpfdgteSeeG
d1wkaa-  ( 283 )    GerhglkpvsVinl---------------egrMegerVpeaLrgldrfeA
d1wnya-  ( 332 )    ArvygLpllkTvde---------------egkLlve----pfkglyfreA
                    aaaa                                          aaaa

                             210       220  
d1ffya2  ( 371 )    NkavTdllTekgAlLkldfithsy
d1h3na2  ( 398 )    kr-kViawLeekglgkgrvty   
d1wkaa-  ( 318 )    rr-kAVelFreaghLvkeedy   
d1wnya-  ( 363 )    nr-aIlrdLrgrglLfkees    
                    aa aaaaaaaa   bbbbbb

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1ffya2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1ffya2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Isoleucyl-tRNA synthetase (IleRS)	ValRS/IleRS/LeuRS editing domain	Staphylococcus aureus [TaxId: 1280]	view
d1h3na2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1h3na2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Leucyl-tRNA synthetase (LeuRS)	ValRS/IleRS/LeuRS editing domain	Thermus thermophilus [TaxId: 274]	view
d1wkaa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1wkaa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	ValRS/IleRS/LeuRS editing domain	Thermus thermophilus [TaxId: 274]	view
d1wnya- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1wnya- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	ValRS/IleRS/LeuRS editing domain	Thermus thermophilus [TaxId: 274]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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H	D	K	R	S	A	S	I	Y	V	A	F	N	V	K	D	D	K	G	V	V	D	A	D	A	K	F	I	I	W	T	T	T	P	W	T	I	P	S	N	V	A	I	T	V	H	P	E	-	-	-	-	-	L	K	Y	G	Q	Y	N	V	N	G	E	K	Y	I	I	A	E	A	L	S	D	A	V	A	E	A	L	D	W	D	K	A	-	-	-	-	-	S	I	K	L	E	K	E	Y	T	G	K	E	L	E	W	V	V	A	Q	H	P	F	L	D	R	-	-	E	S	L	V	I	N	G	D	H	V	T	T	D	A	-	G	T	G	C	V	H	T	A	P	G	H	G	E	D	D	Y	I	V	G	Q	Q	Y	E	L	P	V	I	S	P	I	D	D	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	K	G	V	F	T	E	-	-	E	G	G	Q	F	E	G	M	F	Y	D	K	A	N	K	A	V	T	D	L	L	T	E	K	G	A	L	L	K	L	D	F	I	T	H	S	Y
-	-	-	R	S	E	G	A	E	I	L	F	P	V	E	G	-	-	-	-	-	-	K	E	V	R	I	P	V	F	T	T	R	P	D	T	L	F	G	A	T	F	L	V	L	A	P	E	H	P	L	T	L	E	L	A	A	-	-	-	P	E	K	-	-	-	-	-	-	R	E	E	V	L	A	Y	V	E	A	A	K	R	K	T	E	I	E	R	Q	A	E	G	R	E	K	T	G	V	F	-	-	-	-	L	G	A	Y	A	L	N	P	A	T	-	-	-	G	E	R	I	P	I	W	T	A	D	Y	V	L	F	G	Y	G	T	G	A	I	M	A	V	P	A	H	D	Q	R	D	Y	E	F	A	R	K	F	G	L	P	I	K	K	V	I	E	R	P	G	E	P	L	P	E	P	L	E	R	A	Y	E	E	P	G	I	M	V	N	-	-	-	S	G	P	F	D	G	T	E	S	E	E	G	K	R	-	K	V	I	A	W	L	E	E	K	G	L	G	K	G	R	V	T	Y	-	-	-
-	-	-	-	G	K	L	Y	T	L	R	Y	E	V	E	G	-	-	-	-	G	-	-	-	G	F	I	E	I	A	T	V	R	P	E	T	V	F	A	D	Q	A	I	A	V	H	P	E	D	E	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	R	Y	R	H	L	L	G	K	R	A	R	I	P	L	T	-	-	-	E	V	W	I	P	I	L	A	D	P	A	V	E	K	D	F	G	T	G	A	L	K	V	T	P	A	H	D	P	L	D	Y	E	I	G	E	R	H	G	L	K	P	V	S	V	I	N	L	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	E	G	R	M	E	G	E	R	V	P	E	A	L	R	G	L	D	R	F	E	A	R	R	-	K	A	V	E	L	F	R	E	A	G	H	L	V	K	E	E	D	Y	-	-	-
-	-	-	-	D	P	S	V	Y	V	R	F	P	L	K	E	P	K	K	L	G	L	E	K	A	S	L	L	I	W	T	T	T	P	W	T	L	P	G	N	V	A	A	A	V	H	P	E	Y	T	-	-	-	-	Y	A	A	F	Q	V	G	D	-	E	A	L	I	L	E	E	G	L	G	R	K	L	L	G	E	-	-	-	-	-	-	-	-	-	-	-	G	T	P	V	L	K	T	F	P	G	K	A	L	E	G	L	P	Y	T	P	P	Y	P	Q	A	L	E	K	G	Y	F	V	V	L	A	D	Y	V	S	Q	E	D	G	T	G	I	V	H	Q	A	P	A	F	G	A	E	D	L	E	T	A	R	V	Y	G	L	P	L	L	K	T	V	D	E	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	E	G	K	L	L	V	E	-	-	-	-	P	F	K	G	L	Y	F	R	E	A	N	R	-	A	I	L	R	D	L	R	G	R	G	L	L	F	K	E	E	S	-	-	-	-

Member	Chain	UniProtKB	GO term
d1ffya2	A	P41972	GO:0000049
d1ffya2	A	P41972	GO:0000166
d1ffya2	A	P41972	GO:0002161
d1ffya2	A	P41972	GO:0004812
d1ffya2	A	P41972	GO:0004822
d1ffya2	A	P41972	GO:0005524
d1ffya2	A	P41972	GO:0005737
d1ffya2	A	P41972	GO:0005829
d1ffya2	A	P41972	GO:0006412
d1ffya2	A	P41972	GO:0006418
d1ffya2	A	P41972	GO:0006428
d1ffya2	A	P41972	GO:0008270
d1ffya2	A	P41972	GO:0046872
d1ffya2	A	P41972	GO:0106074
d1ffya2	A	P41972	GO:0000049
d1ffya2	A	P41972	GO:0000166
d1ffya2	A	P41972	GO:0002161
d1ffya2	A	P41972	GO:0004812
d1ffya2	A	P41972	GO:0004822
d1ffya2	A	P41972	GO:0005524
d1ffya2	A	P41972	GO:0005737
d1ffya2	A	P41972	GO:0005829
d1ffya2	A	P41972	GO:0006412
d1ffya2	A	P41972	GO:0006418
d1ffya2	A	P41972	GO:0006428
d1ffya2	A	P41972	GO:0008270
d1ffya2	A	P41972	GO:0046872
d1ffya2	A	P41972	GO:0106074
d1ffya2	A	P41972	GO:0000049
d1ffya2	A	P41972	GO:0000166
d1ffya2	A	P41972	GO:0002161
d1ffya2	A	P41972	GO:0004812
d1ffya2	A	P41972	GO:0004822
d1ffya2	A	P41972	GO:0005524
d1ffya2	A	P41972	GO:0005737
d1ffya2	A	P41972	GO:0005829
d1ffya2	A	P41972	GO:0006412
d1ffya2	A	P41972	GO:0006418
d1ffya2	A	P41972	GO:0006428
d1ffya2	A	P41972	GO:0008270
d1ffya2	A	P41972	GO:0046872
d1ffya2	A	P41972	GO:0106074
d1ffya2	A	P41972	GO:0000049
d1ffya2	A	P41972	GO:0000166
d1ffya2	A	P41972	GO:0002161
d1ffya2	A	P41972	GO:0004812
d1ffya2	A	P41972	GO:0004822
d1ffya2	A	P41972	GO:0005524
d1ffya2	A	P41972	GO:0005737
d1ffya2	A	P41972	GO:0005829
d1ffya2	A	P41972	GO:0006412
d1ffya2	A	P41972	GO:0006418
d1ffya2	A	P41972	GO:0006428
d1ffya2	A	P41972	GO:0008270
d1ffya2	A	P41972	GO:0046872
d1ffya2	A	P41972	GO:0106074
d1h3na2	A	Q7SIE4	GO:0000166
d1h3na2	A	Q7SIE4	GO:0002161
d1h3na2	A	Q7SIE4	GO:0004812
d1h3na2	A	Q7SIE4	GO:0004823
d1h3na2	A	Q7SIE4	GO:0005524
d1h3na2	A	Q7SIE4	GO:0005737
d1h3na2	A	Q7SIE4	GO:0005829
d1h3na2	A	Q7SIE4	GO:0006412
d1h3na2	A	Q7SIE4	GO:0006418
d1h3na2	A	Q7SIE4	GO:0006429
d1h3na2	A	Q7SIE4	GO:0046872
d1h3na2	A	Q7SIE4	GO:0106074
d1h3na2	A	Q7SIE4	GO:0000166
d1h3na2	A	Q7SIE4	GO:0002161
d1h3na2	A	Q7SIE4	GO:0004812
d1h3na2	A	Q7SIE4	GO:0004823
d1h3na2	A	Q7SIE4	GO:0005524
d1h3na2	A	Q7SIE4	GO:0005737
d1h3na2	A	Q7SIE4	GO:0005829
d1h3na2	A	Q7SIE4	GO:0006412
d1h3na2	A	Q7SIE4	GO:0006418
d1h3na2	A	Q7SIE4	GO:0006429
d1h3na2	A	Q7SIE4	GO:0046872
d1h3na2	A	Q7SIE4	GO:0106074
d1h3na2	A	Q7SIE4	GO:0000166
d1h3na2	A	Q7SIE4	GO:0002161
d1h3na2	A	Q7SIE4	GO:0004812
d1h3na2	A	Q7SIE4	GO:0004823
d1h3na2	A	Q7SIE4	GO:0005524
d1h3na2	A	Q7SIE4	GO:0005737
d1h3na2	A	Q7SIE4	GO:0005829
d1h3na2	A	Q7SIE4	GO:0006412
d1h3na2	A	Q7SIE4	GO:0006418
d1h3na2	A	Q7SIE4	GO:0006429
d1h3na2	A	Q7SIE4	GO:0046872
d1h3na2	A	Q7SIE4	GO:0106074
d1h3na2	A	Q7SIE4	GO:0000166
d1h3na2	A	Q7SIE4	GO:0002161
d1h3na2	A	Q7SIE4	GO:0004812
d1h3na2	A	Q7SIE4	GO:0004823
d1h3na2	A	Q7SIE4	GO:0005524
d1h3na2	A	Q7SIE4	GO:0005737
d1h3na2	A	Q7SIE4	GO:0005829
d1h3na2	A	Q7SIE4	GO:0006412
d1h3na2	A	Q7SIE4	GO:0006418
d1h3na2	A	Q7SIE4	GO:0006429
d1h3na2	A	Q7SIE4	GO:0046872
d1h3na2	A	Q7SIE4	GO:0106074

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160										170										180										190										200										210										220
H	D	K	R	S	A	S	I	Y	V	A	F	N	V	K	D	D	K	G	V	V	D	A	D	A	K	F	I	I	W	T	T	T	P	W	T	I	P	S	N	V	A	I	T	V	H	P	E	-	-	-	-	-	L	K	Y	G	Q	Y	N	V	N	G	E	K	Y	I	I	A	E	A	L	S	D	A	V	A	E	A	L	D	W	D	K	A	-	-	-	-	-	S	I	K	L	E	K	E	Y	T	G	K	E	L	E	W	V	V	A	Q	H	P	F	L	D	R	-	-	E	S	L	V	I	N	G	D	H	V	T	T	D	A	-	G	T	G	C	V	H	T	A	P	G	H	G	E	D	D	Y	I	V	G	Q	Q	Y	E	L	P	V	I	S	P	I	D	D	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	K	G	V	F	T	E	-	-	E	G	G	Q	F	E	G	M	F	Y	D	K	A	N	K	A	V	T	D	L	L	T	E	K	G	A	L	L	K	L	D	F	I	T	H	S	Y
-	-	-	R	S	E	G	A	E	I	L	F	P	V	E	G	-	-	-	-	-	-	K	E	V	R	I	P	V	F	T	T	R	P	D	T	L	F	G	A	T	F	L	V	L	A	P	E	H	P	L	T	L	E	L	A	A	-	-	-	P	E	K	-	-	-	-	-	-	R	E	E	V	L	A	Y	V	E	A	A	K	R	K	T	E	I	E	R	Q	A	E	G	R	E	K	T	G	V	F	-	-	-	-	L	G	A	Y	A	L	N	P	A	T	-	-	-	G	E	R	I	P	I	W	T	A	D	Y	V	L	F	G	Y	G	T	G	A	I	M	A	V	P	A	H	D	Q	R	D	Y	E	F	A	R	K	F	G	L	P	I	K	K	V	I	E	R	P	G	E	P	L	P	E	P	L	E	R	A	Y	E	E	P	G	I	M	V	N	-	-	-	S	G	P	F	D	G	T	E	S	E	E	G	K	R	-	K	V	I	A	W	L	E	E	K	G	L	G	K	G	R	V	T	Y	-	-	-
-	-	-	-	G	K	L	Y	T	L	R	Y	E	V	E	G	-	-	-	-	G	-	-	-	G	F	I	E	I	A	T	V	R	P	E	T	V	F	A	D	Q	A	I	A	V	H	P	E	D	E	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	R	Y	R	H	L	L	G	K	R	A	R	I	P	L	T	-	-	-	E	V	W	I	P	I	L	A	D	P	A	V	E	K	D	F	G	T	G	A	L	K	V	T	P	A	H	D	P	L	D	Y	E	I	G	E	R	H	G	L	K	P	V	S	V	I	N	L	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	E	G	R	M	E	G	E	R	V	P	E	A	L	R	G	L	D	R	F	E	A	R	R	-	K	A	V	E	L	F	R	E	A	G	H	L	V	K	E	E	D	Y	-	-	-
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									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160										170										180										190										200										210										220
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									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160										170										180										190										200										210										220
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-	-	-	-	D	P	S	V	Y	V	R	F	P	L	K	E	P	K	K	L	G	L	E	K	A	S	L	L	I	W	T	T	T	P	W	T	L	P	G	N	V	A	A	A	V	H	P	E	Y	T	-	-	-	-	Y	A	A	F	Q	V	G	D	-	E	A	L	I	L	E	E	G	L	G	R	K	L	L	G	E	-	-	-	-	-	-	-	-	-	-	-	G	T	P	V	L	K	T	F	P	G	K	A	L	E	G	L	P	Y	T	P	P	Y	P	Q	A	L	E	K	G	Y	F	V	V	L	A	D	Y	V	S	Q	E	D	G	T	G	I	V	H	Q	A	P	A	F	G	A	E	D	L	E	T	A	R	V	Y	G	L	P	L	L	K	T	V	D	E	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	E	G	K	L	L	V	E	-	-	-	-	P	F	K	G	L	Y	F	R	E	A	N	R	-	A	I	L	R	D	L	R	G	R	G	L	L	F	K	E	E	S	-	-	-	-