PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d3a9sa2  ( 361 )    aqIfAdVrtywspeaVkrvtgytLegraanGIIHLInsgaaaldGTGeQt
d4f2da2  ( 329 )     tSf-edytyhfek--------------gndLVlGShl-eVcpsIAve--
                          bbbbb                    bbbb       333     

                             60        70        80        90        100 
d3a9sa2  ( 411 )    kdgkpVIkpyyeltdeDikkCleaTqfrpasteyfr-gggystdFlTkGg
d4f2da2  ( 363 )    -----------------------kpildvqhlgiggkddparliFnTqt-
                                             bbbb           bbbb      

                             110       120       130       140       150 
d3a9sa2  ( 460 )    MpVTIsrlnivkglgpVlQIAeGyTvdLpeevhdvLdkrtdptwPTTWFv
d4f2da2  ( 389 )    gpAiVaSlidl-gdryrlLVNcIdTvktph--slp-----klpvANalWk
                     bbbbbbbbb     bbbbbbbbbb                     bbbb

                             160       170       180       190       200 
d3a9sa2  ( 510 )    PnltgegaFkdVysVmnnW----ganhCsIsyghiGadlItlASilriPV
d4f2da2  ( 431 )    Aqp-------dLptAseAwilAgGahhtvFShalnlnd-rqfAe-hdiEi
                    b          aaaaaa           bbb                  b

                             210       220       230   
d3a9sa2  ( 556 )    nMhNVpeekIfrpdaWsmfgtkdlegADyrACkkl
d4f2da2  ( 474 )    tvIdn---dtr-lpafkd-----alrwnevyygf 
                    bb                     aaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d3a9sa2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3a9sa2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Geobacillus pallidus [TaxId: 33936]		view
d4f2da2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4f2da2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Escherichia coli K-12 [TaxId: 83333]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term

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A	Q	I	F	A	D	V	R	T	Y	W	S	P	E	A	V	K	R	V	T	G	Y	T	L	E	G	R	A	A	N	G	I	I	H	L	I	N	S	G	A	A	A	L	D	G	T	G	E	Q	T	K	D	G	K	P	V	I	K	P	Y	Y	E	L	T	D	E	D	I	K	K	C	L	E	A	T	Q	F	R	P	A	S	T	E	Y	F	R	-	G	G	G	Y	S	T	D	F	L	T	K	G	G	M	P	V	T	I	S	R	L	N	I	V	K	G	L	G	P	V	L	Q	I	A	E	G	Y	T	V	D	L	P	E	E	V	H	D	V	L	D	K	R	T	D	P	T	W	P	T	T	W	F	V	P	N	L	T	G	E	G	A	F	K	D	V	Y	S	V	M	N	N	W	-	-	-	-	G	A	N	H	C	S	I	S	Y	G	H	I	G	A	D	L	I	T	L	A	S	I	L	R	I	P	V	N	M	H	N	V	P	E	E	K	I	F	R	P	D	A	W	S	M	F	G	T	K	D	L	E	G	A	D	Y	R	A	C	K	K	L
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A	Q	I	F	A	D	V	R	T	Y	W	S	P	E	A	V	K	R	V	T	G	Y	T	L	E	G	R	A	A	N	G	I	I	H	L	I	N	S	G	A	A	A	L	D	G	T	G	E	Q	T	K	D	G	K	P	V	I	K	P	Y	Y	E	L	T	D	E	D	I	K	K	C	L	E	A	T	Q	F	R	P	A	S	T	E	Y	F	R	-	G	G	G	Y	S	T	D	F	L	T	K	G	G	M	P	V	T	I	S	R	L	N	I	V	K	G	L	G	P	V	L	Q	I	A	E	G	Y	T	V	D	L	P	E	E	V	H	D	V	L	D	K	R	T	D	P	T	W	P	T	T	W	F	V	P	N	L	T	G	E	G	A	F	K	D	V	Y	S	V	M	N	N	W	-	-	-	-	G	A	N	H	C	S	I	S	Y	G	H	I	G	A	D	L	I	T	L	A	S	I	L	R	I	P	V	N	M	H	N	V	P	E	E	K	I	F	R	P	D	A	W	S	M	F	G	T	K	D	L	E	G	A	D	Y	R	A	C	K	K	L
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