PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1jlya1  (   1 )        agLpv-iMcLkSnnhqkyLrYqsdniqQyGLLqFsAdkilDplAqF
d1jlya2  ( 154 )    wksifqFpkgyVTFkGn-ngkyLGVit--inqlpCLqFgydnlndpkVaH
                               bbbb      bbbb          bbbbb         b

                             60        70        80        90        100 
d1jlya1  (  46 )    eVepSktydglVHIkSrytnkyLvRwspnhywItAsanepdenksnwaCT
d1jlya2  ( 201 )    qMfvtsn--gtICIkSnymnkfWrLst--ddWILVdgndPretn--eaaA
                    bbbb       bbbbb     bbbb       bbbbb             

                             110       120       130       140       150 
d1jlya1  (  96 )    LFkPlyveegnmkkVrLlHvqlghyTQNytvg-gsfvsYLfAessqidtg
d1jlya2  ( 245 )    lFrsdVhd---fnvISLlNmqktwfIkrftsgkpgFinCMNAatqnvd--
                     bbbbb       bbbbbb    bbbbbb         bbbbbb      

                             160 
d1jlya1  ( 145 )    skDvFhVid 
d1jlya2  ( 290 )    etAiLeIiel
                        bbbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1jlya1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1jlya1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Agglutinin	Agglutinin	Love-lies-bleeding (Amaranthus caudatus) [TaxId: 3567]		view
d1jlya2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1jlya2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Agglutinin	Agglutinin	Love-lies-bleeding (Amaranthus caudatus) [TaxId: 3567]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term

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