PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1b3qa2  ( 540 )                tlaiicAllVkVnnlvyAIpianIdtilsIskediqrv
d2ho9a-  (   1 )    mtgmtnvtklasepsgqeFlvFtlGdeeYGidilkvqeirgYd--qvtri
d2qdla1  (  10 )                  mpkkIVVFsLAeelYGLdifdVhevvkdv--sitki
d4jpbw-  (   8 )                 lkefeVlSFeIdeqALAFdvdniemvieks--ditpv
                                   bbbbbbbbb  bbbbbb333bbbbbb         

                             60        70        80        90        100 
d1b3qa2  ( 578 )    qd-----rdvIvirgevIpVyrLwevlqiehkeeleeMeAVIVrvgnrky
d2ho9a-  (  49 )    antpafikGvtnlrgvivpivDlriKFsqvdvdyndntvvivlnlgqrvv
d2qdla1  (  44 )    peTpefIeGiinlrgkiIpVIdLkkrFgigkrgkskdSrIIIVeIlgqkA
d4jpbw-  (  43 )    pksrhfveGvinlrgriIpVVNLAkILgi-sfdeqkMksIIVArtkdveV
                           bbbbbb  bbbbbbbaaaaa           bbbbbbb  bbb

                             110       120       130       140       150 
d1b3qa2  ( 623 )    GIVVddllgqddIv---iksl--gkvfsevkefsgAAiLgdgsiAlIInV
d2ho9a-  (  99 )    GivvdgvsdvlsltaeqirPaPefavtlsteYltglGAl-gdrmlilvni
d2qdla1  (  94 )    GLiVDavhevipidensiepppp-vttIdtafVeGIAkt-ddkmIIIIkl
d4jpbw-  (  92 )    GFLVdrvlgvlrItenqldltnvsdkf--gkkskglVkt-dgrlIiYLdI
                    bbbb bbbbbbbbb               333bbbbbbb   bbbbbb  

                             160       170 
d1b3qa2  ( 668 )    sgiv                
d2ho9a-  ( 148 )    ekllnseemalldSAaseva
d2qdla1  ( 142 )    hfLFevgkemll        
d4jpbw-  ( 139 )    dkIIeeitv

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1b3qa2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1b3qa2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Histidine kinase CheA, C-terminal domain	CheW-like	Thermotoga maritima [TaxId: 2336]	view
d2ho9a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2ho9a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Escherichia coli [TaxId: 562]	view
d2qdla1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2qdla1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Thermoanaerobacter tengcongensis [TaxId: 273068]	view
d4jpbw- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4jpbw- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	CheW-like	Thermotoga maritima [TaxId: 243274]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1b3qa2	A	Q56310	GO:0000155
d1b3qa2	A	Q56310	GO:0000160
d1b3qa2	A	Q56310	GO:0004673
d1b3qa2	A	Q56310	GO:0005737
d1b3qa2	A	Q56310	GO:0006935
d1b3qa2	A	Q56310	GO:0007165
d1b3qa2	A	Q56310	GO:0016310
d1b3qa2	A	Q56310	GO:0016772
d1b3qa2	A	Q56310	GO:0000155
d1b3qa2	A	Q56310	GO:0000160
d1b3qa2	A	Q56310	GO:0004673
d1b3qa2	A	Q56310	GO:0005737
d1b3qa2	A	Q56310	GO:0006935
d1b3qa2	A	Q56310	GO:0007165
d1b3qa2	A	Q56310	GO:0016310
d1b3qa2	A	Q56310	GO:0016772

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