PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d3zs3a-  (   1 )    akItFtNnÇpntVwPGTlTgdqkpqLsltGFeLaskasrsVdApspWs-g
d4bcta-  (  25 )    AtFnIiNnÇpftVwAAAvp--------gGGkrLdrgqnwiinPgagtkgA
                      bbbbb      bbbbb                   bbbb        b

                             60        70        80        90        100 
d3zs3a-  (  50 )    rFWGRtrÇstdaagkftÇeTAdÇgsgqvaÇngagAvppATlVeItIa--a
d4bcta-  (  67 )    rVWPRtgÇnFdgagrgkÇqTGDÇn-gllqÇq-afGqpPNTLAeYaLnqf-
                    bbbbbbbbbb     bbbbb                    bbbbbb    

                             110       120       130       140       150 
d3zs3a-  (  98 )    nggqDyYdVSLvdGFNlpMsVaPqggtgeçkpSsÇpanVnkvÇpapLqvk
d4bcta-  ( 114 )    nn-lDfFdISLvdGFNVaMeFsPtsg-gçtrGIkÇtadIngqÇpneLrap
                        bbbbbb        bbbbb         bbb         333bb 

                             160       170       180       190       200 
d3zs3a-  ( 148 )    AadgsvISÇksAçlAfgdskyçÇtppnntpetÇppteyseiFekqÇpqAy
d4bcta-  ( 162 )    ------gGÇnNPçtvfktdqyçÇnsg-----nçgltnfSkfFkdrÇpdAy
                           bb  aaaaa  aaaa              aaaaaaaaa     

                             210       220   
d3zs3a-  ( 198 )    SyayddknstFtÇsggPdYvItFçp
d4bcta-  ( 201 )    SypkddqtStftÇpagTnYkVvFçp
                               bb     bbbbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d3zs3a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3zs3a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Malus x [TaxId: 3750]		view
d4bcta- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4bcta- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Osmotin, thaumatin-like protein	Actinidia deliciosa [TaxId: 3627]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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A	T	F	N	I	I	N	N	C	P	F	T	V	W	A	A	A	V	P	-	-	-	-	-	-	-	-	G	G	G	K	R	L	D	R	G	Q	N	W	I	I	N	P	G	A	G	T	K	G	A	R	V	W	P	R	T	G	C	N	F	D	G	A	G	R	G	K	C	Q	T	G	D	C	N	-	G	L	L	Q	C	Q	-	A	F	G	Q	P	P	N	T	L	A	E	Y	A	L	N	Q	F	-	N	N	-	L	D	F	F	D	I	S	L	V	D	G	F	N	V	A	M	E	F	S	P	T	S	G	-	G	C	T	R	G	I	K	C	T	A	D	I	N	G	Q	C	P	N	E	L	R	A	P	-	-	-	-	-	-	G	G	C	N	N	P	C	T	V	F	K	T	D	Q	Y	C	C	N	S	G	-	-	-	-	-	N	C	G	L	T	N	F	S	K	F	F	K	D	R	C	P	D	A	Y	S	Y	P	K	D	D	Q	T	S	T	F	T	C	P	A	G	T	N	Y	K	V	V	F	C	P

Member	Chain	UniProtKB	GO term

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A	T	F	N	I	I	N	N	C	P	F	T	V	W	A	A	A	V	P	-	-	-	-	-	-	-	-	G	G	G	K	R	L	D	R	G	Q	N	W	I	I	N	P	G	A	G	T	K	G	A	R	V	W	P	R	T	G	C	N	F	D	G	A	G	R	G	K	C	Q	T	G	D	C	N	-	G	L	L	Q	C	Q	-	A	F	G	Q	P	P	N	T	L	A	E	Y	A	L	N	Q	F	-	N	N	-	L	D	F	F	D	I	S	L	V	D	G	F	N	V	A	M	E	F	S	P	T	S	G	-	G	C	T	R	G	I	K	C	T	A	D	I	N	G	Q	C	P	N	E	L	R	A	P	-	-	-	-	-	-	G	G	C	N	N	P	C	T	V	F	K	T	D	Q	Y	C	C	N	S	G	-	-	-	-	-	N	C	G	L	T	N	F	S	K	F	F	K	D	R	C	P	D	A	Y	S	Y	P	K	D	D	Q	T	S	T	F	T	C	P	A	G	T	N	Y	K	V	V	F	C	P

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A	K	I	T	F	T	N	N	C	P	N	T	V	W	P	G	T	L	T	G	D	Q	K	P	Q	L	S	L	T	G	F	E	L	A	S	K	A	S	R	S	V	D	A	P	S	P	W	S	-	G	R	F	W	G	R	T	R	C	S	T	D	A	A	G	K	F	T	C	E	T	A	D	C	G	S	G	Q	V	A	C	N	G	A	G	A	V	P	P	A	T	L	V	E	I	T	I	A	-	-	A	N	G	G	Q	D	Y	Y	D	V	S	L	V	D	G	F	N	L	P	M	S	V	A	P	Q	G	G	T	G	E	C	K	P	S	S	C	P	A	N	V	N	K	V	C	P	A	P	L	Q	V	K	A	A	D	G	S	V	I	S	C	K	S	A	C	L	A	F	G	D	S	K	Y	C	C	T	P	P	N	N	T	P	E	T	C	P	P	T	E	Y	S	E	I	F	E	K	Q	C	P	Q	A	Y	S	Y	A	Y	D	D	K	N	S	T	F	T	C	S	G	G	P	D	Y	V	I	T	F	C	P
A	T	F	N	I	I	N	N	C	P	F	T	V	W	A	A	A	V	P	-	-	-	-	-	-	-	-	G	G	G	K	R	L	D	R	G	Q	N	W	I	I	N	P	G	A	G	T	K	G	A	R	V	W	P	R	T	G	C	N	F	D	G	A	G	R	G	K	C	Q	T	G	D	C	N	-	G	L	L	Q	C	Q	-	A	F	G	Q	P	P	N	T	L	A	E	Y	A	L	N	Q	F	-	N	N	-	L	D	F	F	D	I	S	L	V	D	G	F	N	V	A	M	E	F	S	P	T	S	G	-	G	C	T	R	G	I	K	C	T	A	D	I	N	G	Q	C	P	N	E	L	R	A	P	-	-	-	-	-	-	G	G	C	N	N	P	C	T	V	F	K	T	D	Q	Y	C	C	N	S	G	-	-	-	-	-	N	C	G	L	T	N	F	S	K	F	F	K	D	R	C	P	D	A	Y	S	Y	P	K	D	D	Q	T	S	T	F	T	C	P	A	G	T	N	Y	K	V	V	F	C	P

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A	K	I	T	F	T	N	N	C	P	N	T	V	W	P	G	T	L	T	G	D	Q	K	P	Q	L	S	L	T	G	F	E	L	A	S	K	A	S	R	S	V	D	A	P	S	P	W	S	-	G	R	F	W	G	R	T	R	C	S	T	D	A	A	G	K	F	T	C	E	T	A	D	C	G	S	G	Q	V	A	C	N	G	A	G	A	V	P	P	A	T	L	V	E	I	T	I	A	-	-	A	N	G	G	Q	D	Y	Y	D	V	S	L	V	D	G	F	N	L	P	M	S	V	A	P	Q	G	G	T	G	E	C	K	P	S	S	C	P	A	N	V	N	K	V	C	P	A	P	L	Q	V	K	A	A	D	G	S	V	I	S	C	K	S	A	C	L	A	F	G	D	S	K	Y	C	C	T	P	P	N	N	T	P	E	T	C	P	P	T	E	Y	S	E	I	F	E	K	Q	C	P	Q	A	Y	S	Y	A	Y	D	D	K	N	S	T	F	T	C	S	G	G	P	D	Y	V	I	T	F	C	P
A	T	F	N	I	I	N	N	C	P	F	T	V	W	A	A	A	V	P	-	-	-	-	-	-	-	-	G	G	G	K	R	L	D	R	G	Q	N	W	I	I	N	P	G	A	G	T	K	G	A	R	V	W	P	R	T	G	C	N	F	D	G	A	G	R	G	K	C	Q	T	G	D	C	N	-	G	L	L	Q	C	Q	-	A	F	G	Q	P	P	N	T	L	A	E	Y	A	L	N	Q	F	-	N	N	-	L	D	F	F	D	I	S	L	V	D	G	F	N	V	A	M	E	F	S	P	T	S	G	-	G	C	T	R	G	I	K	C	T	A	D	I	N	G	Q	C	P	N	E	L	R	A	P	-	-	-	-	-	-	G	G	C	N	N	P	C	T	V	F	K	T	D	Q	Y	C	C	N	S	G	-	-	-	-	-	N	C	G	L	T	N	F	S	K	F	F	K	D	R	C	P	D	A	Y	S	Y	P	K	D	D	Q	T	S	T	F	T	C	P	A	G	T	N	Y	K	V	V	F	C	P