PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1ca4a1  ( 350 )                                   ydGvfiwkIs--------d
d1lb6a-  ( 348 )                                 q-cngiyiWkIg--------n
d3ivva1  (  28 )                                 kvvkfsymwtin--------n
d4ca1a-  (  91 )    ansvlfpCkyassgCeitlphtekadheelCefrpysCpcpgasckwqgs
                                                      bbbbbb          

                             60        70        80        90        100 
d1ca4a1  ( 361 )    farkrqeAvag-------ripAifSpafyTsr-ygykMCLrIyLnG--dg
d1lb6a-  ( 360 )    FgmhlkcQeee-------kpVvihSpGfyTgk-pGYkLCMrLhLqlptaq
d3ivva1  (  41 )    Fsfc-ree----------mgevikSstfsSgandklkWCLrVNPkGl-de
d4ca1a-  ( 141 )    ldaVmphLmhqhksIttlqgedivFlAtdInlpgavdwvmMQscf-----
                       aaaaaa             bb   bb       bbbbbbb       

                             110       120       130       140       150 
d1ca4a1  ( 401 )    tGgthLSLfFVVMkGpnDall-wpFnqkVtLmLldqn-----nhvidaf-
d1lb6a-  ( 402 )    rcanyISLfVhTmqGeydshlpwpFqgtIrLTIlDqseapvrqnheeim-
d3ivva1  (  79 )    eSkdyLSLyLlLvsCpk-----sevrAkFkFSILna---kgeetkamesq
d4ca1a-  ( 186 )    ---gfhFMLVLeKqek------hqqFFAIVQLiGtrkqAenFaYrLeLng
                        bbbbbbbbb              bbbbbb           bbbbb 

                             160       170       180       190       200 
d1ca4a1  ( 448 )    rPdvtssSFqrPvndmn-iasGCplFCpvskMa------------nsyvr
d1lb6a-  ( 451 )    dAkpellaFqrPtiprNpkgfGyvtFMhleaLr-----------qrtFik
d3ivva1  ( 121 )    rayrFvq----------gkdwGfkkFIrrdfLld---------eangLlp
d4ca1a-  ( 230 )    h----------rrrltweatPrSIhegiatAImnsdCLvFdtsiAqlFAe
                                        bbbbbbbb                      

                             210   
d1ca4a1  ( 487 )    ddaIfIkAiVdltgl
d1lb6a-  ( 490 )    ddtLlVrCeVst   
d3ivva1  ( 152 )    ddkLtLfCeVsVvq 
d4ca1a-  ( 270 )    ngnLgInVtIsmc  
                       bbbbbbbb

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1ca4a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1ca4a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	TNF receptor associated factor 2 (TRAF2)	MATH domain	Human (Homo sapiens) [TaxId: 9606]	view
d1lb6a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1lb6a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	TNF receptor associated factor 6 (TRAF6)	MATH domain	Human (Homo sapiens) [TaxId: 9606]	view
d3ivva1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3ivva1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Speckle-type poz protein SPOP	MATH domain	Human (Homo sapiens) [TaxId: 9606]	view
d4ca1a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4ca1a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	SIAH, seven in absentia homolog	Human (Homo sapiens) [TaxId: 9606]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1ca4a1	A	Q12933	GO:0004842
d1ca4a1	A	Q12933	GO:0005164
d1ca4a1	A	Q12933	GO:0007250
d1ca4a1	A	Q12933	GO:0033209
d1ca4a1	A	Q12933	GO:0042981
d1ca4a1	A	Q12933	GO:0046328
d1ca4a1	A	Q12933	GO:0051865
d1lb6a_	A	Q9Y4K3	GO:0004842
d1lb6a_	A	Q9Y4K3	GO:0005164
d1lb6a_	A	Q9Y4K3	GO:0016567
d1lb6a_	A	Q9Y4K3	GO:0043122
d1lb6a_	A	P25942	GO:0004842
d1lb6a_	A	P25942	GO:0005164
d1lb6a_	A	P25942	GO:0016567
d1lb6a_	A	P25942	GO:0043122

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A	N	S	V	L	F	P	C	K	Y	A	S	S	G	C	E	I	T	L	P	H	T	E	K	A	D	H	E	E	L	C	E	F	R	P	Y	S	C	P	C	P	G	A	S	C	K	W	Q	G	S	L	D	A	V	M	P	H	L	M	H	Q	H	K	S	I	T	T	L	Q	G	E	D	I	V	F	L	A	T	D	I	N	L	P	G	A	V	D	W	V	M	M	Q	S	C	F	-	-	-	-	-	-	-	-	G	F	H	F	M	L	V	L	E	K	Q	E	K	-	-	-	-	-	-	H	Q	Q	F	F	A	I	V	Q	L	I	G	T	R	K	Q	A	E	N	F	A	Y	R	L	E	L	N	G	H	-	-	-	-	-	-	-	-	-	-	R	R	R	L	T	W	E	A	T	P	R	S	I	H	E	G	I	A	T	A	I	M	N	S	D	C	L	V	F	D	T	S	I	A	Q	L	F	A	E	N	G	N	L	G	I	N	V	T	I	S	M	C	-	-

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