PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1n10a1  (1146 )    t-kvtFhVekgSnpnyLALlVkyvngdgdvvaVDIkekgkdkwieLkesw
d3ft1a1  (   1 )    aVqVtFtVqkgSdpkkLvLdIkYtrpgdslaeVeLrqhgseewepLtkkg
                        bbbb       bbbbbbb       bbbbbbb       bb     

                             60        70        80        90       
d1n10a1  (1195 )    gaiWridtpdkLtgpFTVrytTeggtkteaedvIpegWkadtsyes  
d3ft1a1  (  51 )    n-vwevksskpLvGpFNFrFmSkggmrnvfdeVIptaFsigktykpee
                       bbbb        bbbbbbb    bbbbbbbb        bb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1n10a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1n10a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	PHL P 1 C-terminal domain	PHL pollen allergen	Timothy grass (Phleum pratense) [TaxId: 15957]		view
d3ft1a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3ft1a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Timothy grass (Phleum pratense) [TaxId: 15957]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90
T	-	K	V	T	F	H	V	E	K	G	S	N	P	N	Y	L	A	L	L	V	K	Y	V	N	G	D	G	D	V	V	A	V	D	I	K	E	K	G	K	D	K	W	I	E	L	K	E	S	W	G	A	I	W	R	I	D	T	P	D	K	L	T	G	P	F	T	V	R	Y	T	T	E	G	G	T	K	T	E	A	E	D	V	I	P	E	G	W	K	A	D	T	S	Y	E	S	-	-
A	V	Q	V	T	F	T	V	Q	K	G	S	D	P	K	K	L	V	L	D	I	K	Y	T	R	P	G	D	S	L	A	E	V	E	L	R	Q	H	G	S	E	E	W	E	P	L	T	K	K	G	N	-	V	W	E	V	K	S	S	K	P	L	V	G	P	F	N	F	R	F	M	S	K	G	G	M	R	N	V	F	D	E	V	I	P	T	A	F	S	I	G	K	T	Y	K	P	E	E

Member	Chain	UniProtKB	GO term
d1n10a1	A	P43213	GO:0005576
d1n10a1	A	P43213	GO:0019953
d1n10a1	A	P43213	GO:0005576
d1n10a1	A	P43213	GO:0019953
d1n10a1	A	P43213	GO:0005576
d1n10a1	A	P43213	GO:0019953

									10										20										30										40										50										60										70										80										90
T	-	K	V	T	F	H	V	E	K	G	S	N	P	N	Y	L	A	L	L	V	K	Y	V	N	G	D	G	D	V	V	A	V	D	I	K	E	K	G	K	D	K	W	I	E	L	K	E	S	W	G	A	I	W	R	I	D	T	P	D	K	L	T	G	P	F	T	V	R	Y	T	T	E	G	G	T	K	T	E	A	E	D	V	I	P	E	G	W	K	A	D	T	S	Y	E	S	-	-
A	V	Q	V	T	F	T	V	Q	K	G	S	D	P	K	K	L	V	L	D	I	K	Y	T	R	P	G	D	S	L	A	E	V	E	L	R	Q	H	G	S	E	E	W	E	P	L	T	K	K	G	N	-	V	W	E	V	K	S	S	K	P	L	V	G	P	F	N	F	R	F	M	S	K	G	G	M	R	N	V	F	D	E	V	I	P	T	A	F	S	I	G	K	T	Y	K	P	E	E

									10										20										30										40										50										60										70										80										90
T	-	K	V	T	F	H	V	E	K	G	S	N	P	N	Y	L	A	L	L	V	K	Y	V	N	G	D	G	D	V	V	A	V	D	I	K	E	K	G	K	D	K	W	I	E	L	K	E	S	W	G	A	I	W	R	I	D	T	P	D	K	L	T	G	P	F	T	V	R	Y	T	T	E	G	G	T	K	T	E	A	E	D	V	I	P	E	G	W	K	A	D	T	S	Y	E	S	-	-
A	V	Q	V	T	F	T	V	Q	K	G	S	D	P	K	K	L	V	L	D	I	K	Y	T	R	P	G	D	S	L	A	E	V	E	L	R	Q	H	G	S	E	E	W	E	P	L	T	K	K	G	N	-	V	W	E	V	K	S	S	K	P	L	V	G	P	F	N	F	R	F	M	S	K	G	G	M	R	N	V	F	D	E	V	I	P	T	A	F	S	I	G	K	T	Y	K	P	E	E

									10										20										30										40										50										60										70										80										90
T	-	K	V	T	F	H	V	E	K	G	S	N	P	N	Y	L	A	L	L	V	K	Y	V	N	G	D	G	D	V	V	A	V	D	I	K	E	K	G	K	D	K	W	I	E	L	K	E	S	W	G	A	I	W	R	I	D	T	P	D	K	L	T	G	P	F	T	V	R	Y	T	T	E	G	G	T	K	T	E	A	E	D	V	I	P	E	G	W	K	A	D	T	S	Y	E	S	-	-
A	V	Q	V	T	F	T	V	Q	K	G	S	D	P	K	K	L	V	L	D	I	K	Y	T	R	P	G	D	S	L	A	E	V	E	L	R	Q	H	G	S	E	E	W	E	P	L	T	K	K	G	N	-	V	W	E	V	K	S	S	K	P	L	V	G	P	F	N	F	R	F	M	S	K	G	G	M	R	N	V	F	D	E	V	I	P	T	A	F	S	I	G	K	T	Y	K	P	E	E