PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1ze3c2  ( 122 )     lppdqAaekLrFrrsansLtLiNpTpyyltVteLnAgt-----rvLe-n
d2xg5a2  ( 125 )     n--evwQdqLiLnkvsgGYrIeNpTpyyVtViGLGgsekqAeegefe-t
d4ay0a2  ( 132 )     gtpiqfA-nLsWkvdggkLiA-NpSpfyMnIgeLtFgg------sip-s
d4djma2  ( 153 )    kgrpddvagkVewqragnrLkGvNpTpfyinlstltvgg-----keVker
                           333 bbbbb  bbbbb      bbbbbbbb             

                             60        70        80        90       
d1ze3c2  ( 165 )    alVppmgestVkLpsdAgsnItYrTindygaltpkmtGvme       
d2xg5a2  ( 171 )    vmLsprseqtvsa---nyntPyLSYindyggr-pVlsFiçngsrÇsvk
d4ay0a2  ( 175 )    hyIppkstwaFdllaga-rnVsWrIindqggldrlysknvt       
d4djma2  ( 198 )    eyIapfssreYplpag                                
                     bb    bbbbb         bbbb          bb

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1ze3c2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1ze3c2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	FimC	Periplasmic chaperone C-domain	Escherichia coli [TaxId: 562]	view
d2xg5a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2xg5a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	PapD	Periplasmic chaperone C-domain	Escherichia coli [TaxId: 562]	view
d4ay0a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4ay0a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Yersinia pestis [TaxId: 632]	view
d4djma2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4djma2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Escherichia coli [TaxId: 562]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1ze3c2	C	P31697	GO:0005515
d1ze3c2	C	P31697	GO:0030288
d1ze3c2	C	P31697	GO:0042597
d1ze3c2	C	P31697	GO:0043711
d1ze3c2	C	P31697	GO:0044183
d1ze3c2	C	P31697	GO:0061077
d1ze3c2	C	P31697	GO:0071555
d1ze3c2	C	P30130	GO:0005515
d1ze3c2	C	P30130	GO:0030288
d1ze3c2	C	P30130	GO:0042597
d1ze3c2	C	P30130	GO:0043711
d1ze3c2	C	P30130	GO:0044183
d1ze3c2	C	P30130	GO:0061077
d1ze3c2	C	P30130	GO:0071555
d1ze3c2	C	P08191	GO:0005515
d1ze3c2	C	P08191	GO:0030288
d1ze3c2	C	P08191	GO:0042597
d1ze3c2	C	P08191	GO:0043711
d1ze3c2	C	P08191	GO:0044183
d1ze3c2	C	P08191	GO:0061077
d1ze3c2	C	P08191	GO:0071555
d1ze3c2	C	P31697	GO:0005515
d1ze3c2	C	P31697	GO:0030288
d1ze3c2	C	P31697	GO:0042597
d1ze3c2	C	P31697	GO:0043711
d1ze3c2	C	P31697	GO:0044183
d1ze3c2	C	P31697	GO:0061077
d1ze3c2	C	P31697	GO:0071555
d1ze3c2	C	P30130	GO:0005515
d1ze3c2	C	P30130	GO:0030288
d1ze3c2	C	P30130	GO:0042597
d1ze3c2	C	P30130	GO:0043711
d1ze3c2	C	P30130	GO:0044183
d1ze3c2	C	P30130	GO:0061077
d1ze3c2	C	P30130	GO:0071555
d1ze3c2	C	P08191	GO:0005515
d1ze3c2	C	P08191	GO:0030288
d1ze3c2	C	P08191	GO:0042597
d1ze3c2	C	P08191	GO:0043711
d1ze3c2	C	P08191	GO:0044183
d1ze3c2	C	P08191	GO:0061077
d1ze3c2	C	P08191	GO:0071555

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