PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1f86a-  (  10 )     cPLmVkVlDavrgspAinVaVhVfrkaa-ddtwepfasgkTsesGelh-
d2g2na-  (   4 )     niLsVhIlNqqtgkpAadVtVtLekkad--ngwlqlntakTdkdGrik-
d2h6ua-  (   6 )    lspLsThVlNiaqgvpGanMtIvLhrldpvssawnilttgiTnddGrCp-
d3qvaa1  (   3 )      tLsThIlDistgtpAegVtVsLsrg--------tlanlvTn-aGria-
d4q14a-  (   2 )     gkLsThVlDtahgtpAaaMrVeLyrIaa-sgtpellkrvvTnldGrTda
                       bbbbbbb    bb    bbbbbbb      bbbbbbbb         

                             60        70        80        90        100 
d1f86a-  (  57 )    gLtteeeFvegiYkVeIdTksyWkalgis--PfhehAevvftAndsgprr
d2g2na-  (  50 )    aLWpeqtAttgdYrVVFkTgdyFkkqnle--SffpeIpvefhI-nkvneh
d2h6ua-  (  55 )    gLItkenFiagvYkMrFeTgkyWdalget--CfypyVeivftI-tntsqh
d3qvaa1  (  44 )    tFs-aapLpagrYcLtAeTgawFarag---rsvftrAqidfvi------h
d4q14a-  (  50 )    pLLsgdeMrtgiYELqFhVAeyFegrgalaepfldlIpirfgI-adedgn
                              bbbbbbb aaaaaaa           bbbbbbb       

                             110       120 
d1f86a-  ( 105 )    ytIaAlLspysystmavvtn
d2g2na-  (  97 )    YhvPLlLsqygystyrgs  
d2h6ua-  ( 102 )    yhvPLlLsrfsystyrgs  
d3qvaa1  (  91 )    fhlPFlIapggwstyrg   
d4q14a-  ( 101 )    yhvpLlVsPwsystyrgs  
                    bb  bbbb  bbbb

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1f86a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1f86a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Transthyretin (synonym: prealbumin)	Transthyretin (synonym: prealbumin)	Human (Homo sapiens) [TaxId: 9606]	view
d2g2na- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2g2na- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Escherichia coli [TaxId: 562]	view
d2h6ua- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2h6ua- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Zebrafish (Danio rerio) [TaxId: 7955]	view
d3qvaa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3qvaa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Klebsiella pneumoniae [TaxId: 272620]	view
d4q14a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4q14a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Brucella melitensis [TaxId: 359391]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	N	I	L	S	V	H	I	L	N	Q	Q	T	G	K	P	A	A	D	V	T	V	T	L	E	K	K	A	D	-	-	N	G	W	L	Q	L	N	T	A	K	T	D	K	D	G	R	I	K	-	A	L	W	P	E	Q	T	A	T	T	G	D	Y	R	V	V	F	K	T	G	D	Y	F	K	K	Q	N	L	E	-	-	S	F	F	P	E	I	P	V	E	F	H	I	-	N	K	V	N	E	H	Y	H	V	P	L	L	L	S	Q	Y	G	Y	S	T	Y	R	G	S	-	-
L	S	P	L	S	T	H	V	L	N	I	A	Q	G	V	P	G	A	N	M	T	I	V	L	H	R	L	D	P	V	S	S	A	W	N	I	L	T	T	G	I	T	N	D	D	G	R	C	P	-	G	L	I	T	K	E	N	F	I	A	G	V	Y	K	M	R	F	E	T	G	K	Y	W	D	A	L	G	E	T	-	-	C	F	Y	P	Y	V	E	I	V	F	T	I	-	T	N	T	S	Q	H	Y	H	V	P	L	L	L	S	R	F	S	Y	S	T	Y	R	G	S	-	-
-	-	T	L	S	T	H	I	L	D	I	S	T	G	T	P	A	E	G	V	T	V	S	L	S	R	G	-	-	-	-	-	-	-	-	T	L	A	N	L	V	T	N	-	A	G	R	I	A	-	T	F	S	-	A	A	P	L	P	A	G	R	Y	C	L	T	A	E	T	G	A	W	F	A	R	A	G	-	-	-	R	S	V	F	T	R	A	Q	I	D	F	V	I	-	-	-	-	-	-	H	F	H	L	P	F	L	I	A	P	G	G	W	S	T	Y	R	G	-	-	-
-	G	K	L	S	T	H	V	L	D	T	A	H	G	T	P	A	A	A	M	R	V	E	L	Y	R	I	A	A	-	S	G	T	P	E	L	L	K	R	V	V	T	N	L	D	G	R	T	D	A	P	L	L	S	G	D	E	M	R	T	G	I	Y	E	L	Q	F	H	V	A	E	Y	F	E	G	R	G	A	L	A	E	P	F	L	D	L	I	P	I	R	F	G	I	-	A	D	E	D	G	N	Y	H	V	P	L	L	V	S	P	W	S	Y	S	T	Y	R	G	S	-	-

Member	Chain	UniProtKB	GO term
d1f86a_	A	P02766	GO:0005179
d1f86a_	A	P02766	GO:0005515
d1f86a_	A	P02766	GO:0005576
d1f86a_	A	P02766	GO:0005615
d1f86a_	A	P02766	GO:0005737
d1f86a_	A	P02766	GO:0006144
d1f86a_	A	P02766	GO:0007165
d1f86a_	A	P02766	GO:0035578
d1f86a_	A	P02766	GO:0042802
d1f86a_	A	P02766	GO:0070062
d1f86a_	A	P02766	GO:0070324

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-	C	P	L	M	V	K	V	L	D	A	V	R	G	S	P	A	I	N	V	A	V	H	V	F	R	K	A	A	-	D	D	T	W	E	P	F	A	S	G	K	T	S	E	S	G	E	L	H	-	G	L	T	T	E	E	E	F	V	E	G	I	Y	K	V	E	I	D	T	K	S	Y	W	K	A	L	G	I	S	-	-	P	F	H	E	H	A	E	V	V	F	T	A	N	D	S	G	P	R	R	Y	T	I	A	A	L	L	S	P	Y	S	Y	S	T	M	A	V	V	T	N
-	N	I	L	S	V	H	I	L	N	Q	Q	T	G	K	P	A	A	D	V	T	V	T	L	E	K	K	A	D	-	-	N	G	W	L	Q	L	N	T	A	K	T	D	K	D	G	R	I	K	-	A	L	W	P	E	Q	T	A	T	T	G	D	Y	R	V	V	F	K	T	G	D	Y	F	K	K	Q	N	L	E	-	-	S	F	F	P	E	I	P	V	E	F	H	I	-	N	K	V	N	E	H	Y	H	V	P	L	L	L	S	Q	Y	G	Y	S	T	Y	R	G	S	-	-
L	S	P	L	S	T	H	V	L	N	I	A	Q	G	V	P	G	A	N	M	T	I	V	L	H	R	L	D	P	V	S	S	A	W	N	I	L	T	T	G	I	T	N	D	D	G	R	C	P	-	G	L	I	T	K	E	N	F	I	A	G	V	Y	K	M	R	F	E	T	G	K	Y	W	D	A	L	G	E	T	-	-	C	F	Y	P	Y	V	E	I	V	F	T	I	-	T	N	T	S	Q	H	Y	H	V	P	L	L	L	S	R	F	S	Y	S	T	Y	R	G	S	-	-
-	-	T	L	S	T	H	I	L	D	I	S	T	G	T	P	A	E	G	V	T	V	S	L	S	R	G	-	-	-	-	-	-	-	-	T	L	A	N	L	V	T	N	-	A	G	R	I	A	-	T	F	S	-	A	A	P	L	P	A	G	R	Y	C	L	T	A	E	T	G	A	W	F	A	R	A	G	-	-	-	R	S	V	F	T	R	A	Q	I	D	F	V	I	-	-	-	-	-	-	H	F	H	L	P	F	L	I	A	P	G	G	W	S	T	Y	R	G	-	-	-
-	G	K	L	S	T	H	V	L	D	T	A	H	G	T	P	A	A	A	M	R	V	E	L	Y	R	I	A	A	-	S	G	T	P	E	L	L	K	R	V	V	T	N	L	D	G	R	T	D	A	P	L	L	S	G	D	E	M	R	T	G	I	Y	E	L	Q	F	H	V	A	E	Y	F	E	G	R	G	A	L	A	E	P	F	L	D	L	I	P	I	R	F	G	I	-	A	D	E	D	G	N	Y	H	V	P	L	L	V	S	P	W	S	Y	S	T	Y	R	G	S	-	-

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-	N	I	L	S	V	H	I	L	N	Q	Q	T	G	K	P	A	A	D	V	T	V	T	L	E	K	K	A	D	-	-	N	G	W	L	Q	L	N	T	A	K	T	D	K	D	G	R	I	K	-	A	L	W	P	E	Q	T	A	T	T	G	D	Y	R	V	V	F	K	T	G	D	Y	F	K	K	Q	N	L	E	-	-	S	F	F	P	E	I	P	V	E	F	H	I	-	N	K	V	N	E	H	Y	H	V	P	L	L	L	S	Q	Y	G	Y	S	T	Y	R	G	S	-	-
L	S	P	L	S	T	H	V	L	N	I	A	Q	G	V	P	G	A	N	M	T	I	V	L	H	R	L	D	P	V	S	S	A	W	N	I	L	T	T	G	I	T	N	D	D	G	R	C	P	-	G	L	I	T	K	E	N	F	I	A	G	V	Y	K	M	R	F	E	T	G	K	Y	W	D	A	L	G	E	T	-	-	C	F	Y	P	Y	V	E	I	V	F	T	I	-	T	N	T	S	Q	H	Y	H	V	P	L	L	L	S	R	F	S	Y	S	T	Y	R	G	S	-	-
-	-	T	L	S	T	H	I	L	D	I	S	T	G	T	P	A	E	G	V	T	V	S	L	S	R	G	-	-	-	-	-	-	-	-	T	L	A	N	L	V	T	N	-	A	G	R	I	A	-	T	F	S	-	A	A	P	L	P	A	G	R	Y	C	L	T	A	E	T	G	A	W	F	A	R	A	G	-	-	-	R	S	V	F	T	R	A	Q	I	D	F	V	I	-	-	-	-	-	-	H	F	H	L	P	F	L	I	A	P	G	G	W	S	T	Y	R	G	-	-	-
-	G	K	L	S	T	H	V	L	D	T	A	H	G	T	P	A	A	A	M	R	V	E	L	Y	R	I	A	A	-	S	G	T	P	E	L	L	K	R	V	V	T	N	L	D	G	R	T	D	A	P	L	L	S	G	D	E	M	R	T	G	I	Y	E	L	Q	F	H	V	A	E	Y	F	E	G	R	G	A	L	A	E	P	F	L	D	L	I	P	I	R	F	G	I	-	A	D	E	D	G	N	Y	H	V	P	L	L	V	S	P	W	S	Y	S	T	Y	R	G	S	-	-

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-	C	P	L	M	V	K	V	L	D	A	V	R	G	S	P	A	I	N	V	A	V	H	V	F	R	K	A	A	-	D	D	T	W	E	P	F	A	S	G	K	T	S	E	S	G	E	L	H	-	G	L	T	T	E	E	E	F	V	E	G	I	Y	K	V	E	I	D	T	K	S	Y	W	K	A	L	G	I	S	-	-	P	F	H	E	H	A	E	V	V	F	T	A	N	D	S	G	P	R	R	Y	T	I	A	A	L	L	S	P	Y	S	Y	S	T	M	A	V	V	T	N
-	N	I	L	S	V	H	I	L	N	Q	Q	T	G	K	P	A	A	D	V	T	V	T	L	E	K	K	A	D	-	-	N	G	W	L	Q	L	N	T	A	K	T	D	K	D	G	R	I	K	-	A	L	W	P	E	Q	T	A	T	T	G	D	Y	R	V	V	F	K	T	G	D	Y	F	K	K	Q	N	L	E	-	-	S	F	F	P	E	I	P	V	E	F	H	I	-	N	K	V	N	E	H	Y	H	V	P	L	L	L	S	Q	Y	G	Y	S	T	Y	R	G	S	-	-
L	S	P	L	S	T	H	V	L	N	I	A	Q	G	V	P	G	A	N	M	T	I	V	L	H	R	L	D	P	V	S	S	A	W	N	I	L	T	T	G	I	T	N	D	D	G	R	C	P	-	G	L	I	T	K	E	N	F	I	A	G	V	Y	K	M	R	F	E	T	G	K	Y	W	D	A	L	G	E	T	-	-	C	F	Y	P	Y	V	E	I	V	F	T	I	-	T	N	T	S	Q	H	Y	H	V	P	L	L	L	S	R	F	S	Y	S	T	Y	R	G	S	-	-
-	-	T	L	S	T	H	I	L	D	I	S	T	G	T	P	A	E	G	V	T	V	S	L	S	R	G	-	-	-	-	-	-	-	-	T	L	A	N	L	V	T	N	-	A	G	R	I	A	-	T	F	S	-	A	A	P	L	P	A	G	R	Y	C	L	T	A	E	T	G	A	W	F	A	R	A	G	-	-	-	R	S	V	F	T	R	A	Q	I	D	F	V	I	-	-	-	-	-	-	H	F	H	L	P	F	L	I	A	P	G	G	W	S	T	Y	R	G	-	-	-
-	G	K	L	S	T	H	V	L	D	T	A	H	G	T	P	A	A	A	M	R	V	E	L	Y	R	I	A	A	-	S	G	T	P	E	L	L	K	R	V	V	T	N	L	D	G	R	T	D	A	P	L	L	S	G	D	E	M	R	T	G	I	Y	E	L	Q	F	H	V	A	E	Y	F	E	G	R	G	A	L	A	E	P	F	L	D	L	I	P	I	R	F	G	I	-	A	D	E	D	G	N	Y	H	V	P	L	L	V	S	P	W	S	Y	S	T	Y	R	G	S	-	-