PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1h8la1  ( 305 )      GIwGfVlDa------tdgrGilnAtIsVadin--hpvtTykdGdYwrl
d1uwya1  ( 297 )      GVkgqVfDq------n-gnplpnViVeVqdrkhiçpyrTnkyGeYyll
d5m0yb1  (   8 )    kTtVsGyIsVdfdyppeseskiksgFnVkVagte--lstkTdekGyFeIs
                       bbbbbb                 bbbb               bbbb 

                             60        70        80        90        100 
d1h8la1  ( 345 )    Lvq---gtykVtAsargydpvtktVeVdsk----ggvqvnFtLsrt    
d1uwya1  ( 338 )    Llp---gsyiInVtVpghdphitkviIpeksqnfsalkkdIlLpfqgpsç
d5m0yb1  (  56 )    gIpgdmreFtLeIskrnylkrnvtvngtg--------klvvstednpliL
                           bbbbbbb      bbbbbb           b            

                             
d1h8la1                      
d1uwya1  ( 394 )    pmiplyrnl
d5m0yb1  (  98 )    wagdv

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1h8la1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1h8la1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Carboxypeptidase D C-terminal domain	Carboxypeptidase regulatory domain	Crested duck (Lophonetta specularioides) [TaxId: 8836]	view
d1uwya1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1uwya1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Carboxypeptidase M C-terminal domain	Carboxypeptidase regulatory domain	Human (Homo sapiens) [TaxId: 9606]	view
d5m0yb1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5m0yb1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Clostridium thermocellum [TaxId: 203119]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	-	G	I	W	G	F	V	L	D	A	-	-	-	-	-	-	T	D	G	R	G	I	L	N	A	T	I	S	V	A	D	I	N	-	-	H	P	V	T	T	Y	K	D	G	D	Y	W	R	L	L	V	Q	-	-	-	G	T	Y	K	V	T	A	S	A	R	G	Y	D	P	V	T	K	T	V	E	V	D	S	K	-	-	-	-	G	G	V	Q	V	N	F	T	L	S	R	T	-	-	-	-	-	-	-	-	-	-	-	-	-
-	-	G	V	K	G	Q	V	F	D	Q	-	-	-	-	-	-	N	-	G	N	P	L	P	N	V	I	V	E	V	Q	D	R	K	H	I	C	P	Y	R	T	N	K	Y	G	E	Y	Y	L	L	L	L	P	-	-	-	G	S	Y	I	I	N	V	T	V	P	G	H	D	P	H	I	T	K	V	I	I	P	E	K	S	Q	N	F	S	A	L	K	K	D	I	L	L	P	F	Q	G	P	S	C	P	M	I	P	L	Y	R	N	L
K	T	T	V	S	G	Y	I	S	V	D	F	D	Y	P	P	E	S	E	S	K	I	K	S	G	F	N	V	K	V	A	G	T	E	-	-	L	S	T	K	T	D	E	K	G	Y	F	E	I	S	G	I	P	G	D	M	R	E	F	T	L	E	I	S	K	R	N	Y	L	K	R	N	V	T	V	N	G	T	G	-	-	-	-	-	-	-	-	K	L	V	V	S	T	E	D	N	P	L	I	L	W	A	G	D	V	-	-	-	-

Member	Chain	UniProtKB	GO term
d1h8la1	A	P83852	GO:0004180
d1h8la1	A	P83852	GO:0004181
d1h8la1	A	P83852	GO:0005615
d1h8la1	A	P83852	GO:0006508
d1h8la1	A	P83852	GO:0006518
d1h8la1	A	P83852	GO:0008237
d1h8la1	A	P83852	GO:0008270
d1h8la1	A	P83852	GO:0016020
d1h8la1	A	P83852	GO:0016485
d1h8la1	A	P83852	GO:0046872
d1uwya1	A	P14384	GO:0004180
d1uwya1	A	P14384	GO:0004181
d1uwya1	A	P14384	GO:0005576
d1uwya1	A	P14384	GO:0005615
d1uwya1	A	P14384	GO:0005886
d1uwya1	A	P14384	GO:0006508
d1uwya1	A	P14384	GO:0006518
d1uwya1	A	P14384	GO:0008237
d1uwya1	A	P14384	GO:0008270
d1uwya1	A	P14384	GO:0009653
d1uwya1	A	P14384	GO:0009986
d1uwya1	A	P14384	GO:0016485
d1uwya1	A	P14384	GO:0046872
d1uwya1	A	P14384	GO:0070062
d1uwya1	A	P14384	GO:0098552

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-	-	G	V	K	G	Q	V	F	D	Q	-	-	-	-	-	-	N	-	G	N	P	L	P	N	V	I	V	E	V	Q	D	R	K	H	I	C	P	Y	R	T	N	K	Y	G	E	Y	Y	L	L	L	L	P	-	-	-	G	S	Y	I	I	N	V	T	V	P	G	H	D	P	H	I	T	K	V	I	I	P	E	K	S	Q	N	F	S	A	L	K	K	D	I	L	L	P	F	Q	G	P	S	C	P	M	I	P	L	Y	R	N	L
K	T	T	V	S	G	Y	I	S	V	D	F	D	Y	P	P	E	S	E	S	K	I	K	S	G	F	N	V	K	V	A	G	T	E	-	-	L	S	T	K	T	D	E	K	G	Y	F	E	I	S	G	I	P	G	D	M	R	E	F	T	L	E	I	S	K	R	N	Y	L	K	R	N	V	T	V	N	G	T	G	-	-	-	-	-	-	-	-	K	L	V	V	S	T	E	D	N	P	L	I	L	W	A	G	D	V	-	-	-	-

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-	-	G	I	W	G	F	V	L	D	A	-	-	-	-	-	-	T	D	G	R	G	I	L	N	A	T	I	S	V	A	D	I	N	-	-	H	P	V	T	T	Y	K	D	G	D	Y	W	R	L	L	V	Q	-	-	-	G	T	Y	K	V	T	A	S	A	R	G	Y	D	P	V	T	K	T	V	E	V	D	S	K	-	-	-	-	G	G	V	Q	V	N	F	T	L	S	R	T	-	-	-	-	-	-	-	-	-	-	-	-	-
-	-	G	V	K	G	Q	V	F	D	Q	-	-	-	-	-	-	N	-	G	N	P	L	P	N	V	I	V	E	V	Q	D	R	K	H	I	C	P	Y	R	T	N	K	Y	G	E	Y	Y	L	L	L	L	P	-	-	-	G	S	Y	I	I	N	V	T	V	P	G	H	D	P	H	I	T	K	V	I	I	P	E	K	S	Q	N	F	S	A	L	K	K	D	I	L	L	P	F	Q	G	P	S	C	P	M	I	P	L	Y	R	N	L
K	T	T	V	S	G	Y	I	S	V	D	F	D	Y	P	P	E	S	E	S	K	I	K	S	G	F	N	V	K	V	A	G	T	E	-	-	L	S	T	K	T	D	E	K	G	Y	F	E	I	S	G	I	P	G	D	M	R	E	F	T	L	E	I	S	K	R	N	Y	L	K	R	N	V	T	V	N	G	T	G	-	-	-	-	-	-	-	-	K	L	V	V	S	T	E	D	N	P	L	I	L	W	A	G	D	V	-	-	-	-

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-	-	G	I	W	G	F	V	L	D	A	-	-	-	-	-	-	T	D	G	R	G	I	L	N	A	T	I	S	V	A	D	I	N	-	-	H	P	V	T	T	Y	K	D	G	D	Y	W	R	L	L	V	Q	-	-	-	G	T	Y	K	V	T	A	S	A	R	G	Y	D	P	V	T	K	T	V	E	V	D	S	K	-	-	-	-	G	G	V	Q	V	N	F	T	L	S	R	T	-	-	-	-	-	-	-	-	-	-	-	-	-
-	-	G	V	K	G	Q	V	F	D	Q	-	-	-	-	-	-	N	-	G	N	P	L	P	N	V	I	V	E	V	Q	D	R	K	H	I	C	P	Y	R	T	N	K	Y	G	E	Y	Y	L	L	L	L	P	-	-	-	G	S	Y	I	I	N	V	T	V	P	G	H	D	P	H	I	T	K	V	I	I	P	E	K	S	Q	N	F	S	A	L	K	K	D	I	L	L	P	F	Q	G	P	S	C	P	M	I	P	L	Y	R	N	L
K	T	T	V	S	G	Y	I	S	V	D	F	D	Y	P	P	E	S	E	S	K	I	K	S	G	F	N	V	K	V	A	G	T	E	-	-	L	S	T	K	T	D	E	K	G	Y	F	E	I	S	G	I	P	G	D	M	R	E	F	T	L	E	I	S	K	R	N	Y	L	K	R	N	V	T	V	N	G	T	G	-	-	-	-	-	-	-	-	K	L	V	V	S	T	E	D	N	P	L	I	L	W	A	G	D	V	-	-	-	-