PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2pr9a1  ( 159 )    igwRregIkyrneLfLDVlEsVnLlMspqGqvlsahVsGrVVMkSyLsgm
d3l81a-  ( 185 )               neVfLdVvErLsVlIasnGsllkVdVqGeIrLkSfLpsg
                                bbbbbbbbbbbbbb     bbbbbbbbbbbbbb     

                             60        70        80        90        100 
d2pr9a1  ( 210 )    PeCkFgMndk------------qsiaiddctfhqCVrls-----rsisFi
d3l81a-  ( 224 )    SeMrIGLteeFsvgkselrgygpgiRVdevsfhssVnldefeshriLrLq
                     bbbbbb                     bbbb              bbb 

                             110       120       130       140       150 
d2pr9a1  ( 267 )    PpdgefeLMrYrTt-dIi--lPFrViPlvrevg-rtkLevkVvIkSnfkp
d3l81a-  ( 274 )    PpqgeltVMrYqLsddLpsplPFrLfpsvqwdrgsgrLqVyLkLrCdLls
                       bbbbbbbbbb         bbbbbbbbb     bbbbbbbbbb    

                             160       170       180       190       200 
d2pr9a1  ( 314 )    sllAqkIeVrIpTPlnTsgVqvicm---kgAkykasenAIvWkik-maGm
d3l81a-  ( 324 )    ksqAlnVrLhLpLprgVvslsqelsspeQkAela--egaLrWdLprVqGg
                        bbbbbbbb     bbbbbbb       bbb    bbbbbb      

                             210       220       230       240       250 
d2pr9a1  ( 362 )    kesqIsAeIellptndkkkwarppIsMnFeVp-fAPSgLkVryLkVfEpk
d3l81a-  ( 372 )    sqlsGlFqMdvpgpp---glglGpAsLsFeLprhTCSgLqVrfLrLafp-
                     bbbbbbbbb              bbbbbbb         bbbbbbb   

                             260       270   
d2pr9a1  ( 411 )    lnysdhdVikwvryiGrSgiYeTrc
d3l81a-  ( 437 )    --------hkwvrhlShSdaYvIri
                            bbbbbbbbbbbbbbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2pr9a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2pr9a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor	Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor	Norway rat (Rattus norvegicus) [TaxId: 10116]		view
d3l81a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3l81a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Human (Homo sapiens) [TaxId: 9606]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d2pr9a1	A	P84092	GO:0005975
d2pr9a1	A	P84092	GO:0006886
d2pr9a1	A	P84092	GO:0016192
d2pr9a1	A	P84092	GO:0030131
d2pr9a1	A	P18508	GO:0005975
d2pr9a1	A	P18508	GO:0006886
d2pr9a1	A	P18508	GO:0016192
d2pr9a1	A	P18508	GO:0030131

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