PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1bg1a2  ( 322 )                                                      
d1mnna-  (  33 )    viltqlnedgttSnyFdkrklkiaprstlqfKvGPpFelvrdyCpVVesh
                                                                      

                             60        70        80        90        100 
d1bg1a2  ( 322 )           vVerqPcMpmhp-drpLVIktgvqFtTkVrl--lvkfp-eLny
d1mnna-  (  83 )    tgrtLdlrIiprIDrgFdhideewVGYkrnyFTLVSTFeTancdldtFLk
                            bbbbbb          bbb    bbbbbbb            

                             110       120       130       140       150 
d1bg1a2  ( 361 )    -------------qLkIkVcIdkdsgdvaalrGsrkFnIlg---------
d1mnna-  ( 133 )    ssFdLlvgrlrVqyFAIkIkAkndddd-----teinLvqhtakrdkgpqf
                                   bbbbbb               bbbb          

                             160       170       180       190       200 
d1bg1a2  ( 389 )    -tntkvMnme-----esn--------------------------------
d1mnna-  ( 184 )    cPsvcpLVPsplpkHqtIreAsnvnitkmkkydstFylhrdhvnyeeygv
                        bb                                            

                             210       220       230       240       250 
d1bg1a2  ( 401 )    ----------ngsLsAeFkhLtLreqrc------gnggrancdaslivtE
d1mnna-  ( 235 )    dSLLfsYpedsIqkVArYerVqFassisvkkpsq--------------qn
                                   bbbbbbbb                           

                             260       270       280       290       300 
d1bg1a2  ( 435 )    ELHlItFetevyhq----------g---lkidlethSlPVVVIsnicqmp
d1mnna-  ( 271 )    khFSLhVILGAVVdpgipydelalgsGmFVyLqEmkTppLIIrgrs---p
                        bbbbbbbbb               bbbbbbbb    bbb       

                             310       320       330       340       350 
d1bg1a2  ( 472 )    nAwASIlWYnmLtnnpknvnFFtkppiGtwdqVaevLswqfssttkrgls
d1mnna-  ( 329 )    snyassq                                           
                                                                      

                             360       370       380       390       400 
d1bg1a2  ( 522 )    ieqlttlAekLlgpgvnysgcqItWakFCkenmagkgfSFWvwLdniIdl
d1mnna-                                                               
                                                                      

                        
d1bg1a2  ( 572 )    vkky
d1mnna-

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1bg1a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1bg1a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	STAT3b	STAT DNA-binding domain	Mouse (Mus musculus) [TaxId: 10090]		view
d1mnna- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1mnna- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	DNA-binding domain from NDT80	DNA-binding domain from NDT80	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1bg1a2	A	P42227	GO:0003677
d1bg1a2	A	P42227	GO:0003700
d1bg1a2	A	P42227	GO:0006355
d1bg1a2	A	P42227	GO:0007165
d1bg1a2	A	P42227	GO:0003677
d1bg1a2	A	P42227	GO:0003700
d1bg1a2	A	P42227	GO:0006355
d1bg1a2	A	P42227	GO:0007165
d1bg1a2	A	P42227	GO:0003677
d1bg1a2	A	P42227	GO:0003700
d1bg1a2	A	P42227	GO:0006355
d1bg1a2	A	P42227	GO:0007165
d1bg1a2	A	P42227	GO:0003677
d1bg1a2	A	P42227	GO:0003700
d1bg1a2	A	P42227	GO:0006355
d1bg1a2	A	P42227	GO:0007165
d1bg1a2	A	P42227	GO:0003677
d1bg1a2	A	P42227	GO:0003700
d1bg1a2	A	P42227	GO:0006355
d1bg1a2	A	P42227	GO:0007165
d1mnna_	A	P38830	GO:0003677
d1mnna_	A	P38830	GO:0003700
d1mnna_	A	P38830	GO:0006355
d1mnna_	A	P38830	GO:0003677
d1mnna_	A	P38830	GO:0003700
d1mnna_	A	P38830	GO:0006355

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V	I	L	T	Q	L	N	E	D	G	T	T	S	N	Y	F	D	K	R	K	L	K	I	A	P	R	S	T	L	Q	F	K	V	G	P	P	F	E	L	V	R	D	Y	C	P	V	V	E	S	H	T	G	R	T	L	D	L	R	I	I	P	R	I	D	R	G	F	D	H	I	D	E	E	W	V	G	Y	K	R	N	Y	F	T	L	V	S	T	F	E	T	A	N	C	D	L	D	T	F	L	K	S	S	F	D	L	L	V	G	R	L	R	V	Q	Y	F	A	I	K	I	K	A	K	N	D	D	D	D	-	-	-	-	-	T	E	I	N	L	V	Q	H	T	A	K	R	D	K	G	P	Q	F	C	P	S	V	C	P	L	V	P	S	P	L	P	K	H	Q	T	I	R	E	A	S	N	V	N	I	T	K	M	K	K	Y	D	S	T	F	Y	L	H	R	D	H	V	N	Y	E	E	Y	G	V	D	S	L	L	F	S	Y	P	E	D	S	I	Q	K	V	A	R	Y	E	R	V	Q	F	A	S	S	I	S	V	K	K	P	S	Q	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Q	N	K	H	F	S	L	H	V	I	L	G	A	V	V	D	P	G	I	P	Y	D	E	L	A	L	G	S	G	M	F	V	Y	L	Q	E	M	K	T	P	P	L	I	I	R	G	R	S	-	-	-	P	S	N	Y	A	S	S	Q	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

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